RNA id: TU719566



Basic Information


Item Value
RNA id TU719566
length 407
RNA type TUCP
GC content 0.57
exon number 1
gene id G632994
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62221272 ~ 62222445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCCCTGCCAGCAATGCCCAGGTCTCCATTGGGCATCCCCTCTGCAGCCAGTGGCAGGGTGTCCCTGAGGTTGGGGGGCACAGGGCCAGGCTCGGGGGTGCTACCCAGGGGAGCCCCTGCCGCCCGGGGAGGAAGAGCGCTGGAGGGGCCCGACAGGCAATCCACCAGGGGGGATACGGGGgtaacagagggaggaggggtctCGTCACATGGCCGGGGCTGGCTCTTCGCGTGGTTCCTGAGGAAAGGAAGATCAGTCAGTCATATCAACTTAACGAACTCAATCGCTCAAGCATAAATGCCATCTATCGTTCAGTCTAACGATATGATCACAAAATAACTAGAGGGGTTCCAGTATGATTCATGCAGAGGATGATGAGGACAGGACATTAAACATTAAGATGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU719563 lncRNA downstream 173 62220301 ~ 62221099 (-) True G632993
TU719562 lncRNA downstream 1766 62218772 ~ 62219506 (-) False G632992
TU719561 lncRNA downstream 2203 62218772 ~ 62219069 (-) False G632992
TU719559 lncRNA downstream 2203 62218859 ~ 62219069 (-) True G632992
TU719558 lncRNA downstream 2538 62218495 ~ 62218734 (-) False G632992
TU719565 lncRNA upstream 118 62221796 ~ 62222050 (-) False G632994
TU719568 lncRNA upstream 118 62221796 ~ 62222445 (-) True G632994
TU719572 lncRNA upstream 823 62222501 ~ 62222705 (-) True G632995
TU719579 lncRNA upstream 1156 62222834 ~ 62223129 (-) True G632997
TU719577 lncRNA upstream 1541 62223219 ~ 62228447 (-) False G632996
XR_002474207.2 mRNA downstream 35326 62175981 ~ 62185946 (-) True LOC110528170
XM_021609997.2 mRNA downstream 45781 62159975 ~ 62175491 (-) True LOC110528169
XM_021609996.2 mRNA downstream 45784 62159975 ~ 62175488 (-) False LOC110528169
XM_036983711.1 mRNA downstream 46817 62159975 ~ 62174455 (-) False LOC110528169
XM_036983709.1 mRNA downstream 300133 61800678 ~ 61921139 (-) False LOC110528991
XM_021608282.2 mRNA upstream 123404 62345082 ~ 62347315 (-) True LOC110527134
LOC110528993 mRNA upstream 127424 62349102 ~ 62349904 (-) True LOC110528993
XR_005052628.1 mRNA upstream 284561 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA upstream 284690 62506368 ~ 62520518 (-) False LOC118965309
XM_021610035.2 mRNA upstream 316655 62538333 ~ 62589746 (-) False slc4a8
TU718974 other downstream 529628 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1021834 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 1030227 61190708 ~ 61191045 (-) True G631740
TU717562 other downstream 1473173 60738495 ~ 60748099 (-) False LOC110528989
TU717152 other downstream 2137415 60083046 ~ 60083857 (-) True G630747
TU719986 other upstream 286541 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 785097 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1564094 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 1564121 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1772838 63994516 ~ 63997239 (-) True LOC110528216

Expression Profile