RNA id: TU719578


Basic Information

Item Value
RNA id TU719578
length 4723
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G632996
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62223219 ~ 62228447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGCCTGAAACTTTTATTTGGACATGAAGAAAGGAGACTGTTAAAAGTATaactggtggacacacacacacacacacttaacacagATGTCGGGGACAAGACCACAGAGCACCGCACACAAAACATTTAGAAATACACAGACGGCAAAATCATTGCAAGCACAGGACCCAGAATCAGCATCTAAGGCAAAAACAAGAAATATTTGTACTTTATTATTCTTTTAAGTTTTTGTTCAGACATCTATTAAATCAGTAATTCAGTGTCTCACATCCCACCCTCGTATGTTACCATGTCCCAGCTGCACCCCCTCCAACGCCTTTGTCCCAGCAGGGAAGTGCTACAAAAACTAATCAAAACAGTTAAAGAAAAATAAAACCCTATTCCTGTAATAATTTCAGCAAACCTGCTAAACACCTTTTCTTCAATGTAGACATCTAAAATGATTTTACACCTTACAGGATTCAGAGATTATTTTCAAACAAAAGTTAGTGCATTTCATTCGACAACACCACTAGCTGCTCTTAACTTAGCCATTAATAGatgtaaaaatataaaacaacaacataggCCCAGTGGTTAGATAGATAACATGTTACTGCACTGCTAGCACCCAGGCAGTGCACCGAATTTTCACTTTACCCAAGTAGCAAATCAGATAACAGTTTTGgaaatactacacacacacacacacacacacacacacacacattttgggaaaaagacaaaaaaaattaaatgcaTTGAAAGAAAAAGGGTACATCAGAGTACATAAAAAAACTAAAGTCAAACTGAGGAACTCTTTCAAAAGATTTACTCAAATCTAAAATGTGCTTACTAATagagggataaaaaaaaaaaaacctgaccAAAGATTAGCCTTCTAGGTGCAAAATCTGTACAAGAACATTCAGACCACCTACACAAGTGGCCTTCGCTCAAATAGGACTACATTAATCAAGCATAACTGGCCAATCAAGAGACAGGGAGCATTATCAATTAACTGACAGCTTTTCCGTCCAACAGTAGGAGGGTTACGAGTTCTCCACATCCCACCCAGAAACAGTTGTGTTGGAGCGAGTTCCCAAGGTTGTCTTTTTGCCTGCTTGACTTTGGTCTGGATCATAGAGATCACAATGTTGTATCTGTGCCaatgaggccatctccatttaaagtagtcaattttcttctgATATTGGAAAAAAGTGTAAAGCTAAAATTGGCATTTTACCACCAGCTACAGTGTTGAAGTCTAGAAACAAATCTTGAGTAATTCATTTATTGTAGCCGCTAGTTGGCGGTCAATGCTCTGATAATTGGTTGATTGCTCCCAatccataggaatccccacccagttgactactttaaaatgacaATGTCCatgcaaaaaaagttattttcaCATAAttatctctatacatttatggtCTGGATAGTGTTCAATCCATTAATACACAAAGGCTGAATTATGAGTTTGCAAGCGCATAGAAAAGGAACAGATCTGAAGGTTGATGCTCCCCATGTCAAGTCAACTCTCCTAATATTACGCAAACTTCCATTTTTCAAACAATGGATGTGTACGGAATTTAAAACAATCGTGAGATATGCATTAAAATCTTCAATCAAAAGAAAACTAAGACAGTAAAGAGAAAATCCAAAAGTGAAATGTACAAGGGAAAAAAGCAGCTAAATCATAATCCTATGAGTTAGCCAGACACCAAAACTCTAATATCCGACAGTCGCTCTGCCCTCAACCCCATCCCAAAATAACGTGACTCATCATTATCACCCTTCAGAATCTCTGCTCAATGAATCAACGGCAACATTGAAAAAGGATAACCCCAAAACGGACATGATCAGAGTTCGACAGCATTTCACGGACAAGAAAACAGCCCTCTGTACACGATAAGCACTAAACACCTACCAACACCACACCTGGAAGTCTCCACTGGCCACCCCTAATCTCATACTGGGACAGGTTCGGTACTGCATGTTATCAACTCAAATTGAGAAGTCAGAACACTAACCGGACTCTTGCTGGGGAAGAACTTTACTGacaaatttattttaaaaaagttttaaaaaataaagtttatttgcattaaaaatgtaaaattccAGTGATCGCTGCTCTAAACCAGTAAGCTCCTTTATAGATTAATTCCTGATGCCAACAAATAAGAGAATGAGAACTGAGTACGTTTACTTGACTTCAGAATTCAGGCCATTTTAAAATGAGCAAGCTCGAATACATAGTACCAAAGACTAGTTTCATGCTTGGGATCCCATTACTATTCTCTAAAATACCATCTAACCTATTCTACATGATACAAGAGCTACCAAAATGCATGGCAGACTACTCTGGAACATGTTGCACAGATATGATGGCATGTTGAAATGGCCAGATATCTGGGGTGGAAAGGTTTCTATTTGATGATAAAGACCACCTGTTCCATCAAGACATAAATAGGAAGGTATATGTTAACGCCGGTATCCTGCATTTGACCACATAGGTACAATTAATTAGACATATTAATACAACAGGTTAAACTTTTATGAAAGACACAAATAATTAAAACTACTCTTCTTAAAAtgacaatcagcagttgaaacaaagCGTTCTCCCTACCCTGTTacagtaaaaagctgagggatggggttggagaaatgtaacaGCTCAAATTCATAGACTGAGCTATGGATGCATAAAAATGACagttgtaaccatgttttgaggctatatagatTTAGTCtgcatttactttgtttacaaacattggagtaaaacaggcttatattttgggttctgatggggtatgacagtggAACAAAGCTTCGATACTTGAAGAATCAAATTGGTACATAAATTAATAATAGGTCCAATAAtgaatgtagcaactgcagactgCCCCTTTAAAAAGGCTACGtataaaatggtcaaattcatgATAACTGTGAACGTGTCAGGTGTCTACAATGCGAGTGCTGACTGCCTCAACTACCAAATACCTTCACTAAGGGAAGACTCCTCCCTTTCTCATGAGCTGTTACCCATGACAACACTTCCTGATCTACTCAAATCCCAACCAATGGATTGGTGGGTCATGTTCATAACACACTGTAGCAAACCacttaaaaaacattttaaaaaaaacttaaaccACTTAAAAAAACAAAAGCAAGCAGTTCATATAGGAAAACTTCTGAGAGTACCTTGCGCCTACTGAACTTGAACCTGGATGGAGAGATTATGCACTAATGGTTGGCGCAATCGTCATTAACCAACCAAAGCATATTTTAACTAAACAGGATTGGCAGACAGTTGGGACCAACAACTCAAACATTTAACCATATGTTTCAAAGTAATAGGACATGGAGTGGAAAATATAATTCAGTGACCGACAGCCTGACTATCCAAACTTTTCCCCACATTTGCACGGTATCCAAGCACCATTATCGTAAAGGTTTTAATGTCCTACTCAAGCAAGGGTATACCAAAAGTGTCCATCAACCGTGAAAATAAAATCATTGATTCTAATAAATTAATATTTTCCCATTGATTCTGAACACAAAATAATTCCAGACTCTTGGCTGACAGGCATCCAAGACTGTTTCTTCACCTAAAAGAAAATGCAGCTTGACAGGCTTCCCAAATCACTCTCTCTCAGAACAGTTCAAAACAGGCACTTCTCTAAAACCATGTGGCCCTCTCGCTTCCAACCTacataaaaacacattttatgaaCTATCCTTAgccctttgccaaaataatcacTTGCCAACCCCTCCAACAACAAATTGCATCATATGTATCAACTCATAACGATGTCATATTGGTGGATGTCCACATCTTTTGCTGTGTCGCATAATGACTAGATTTGCTAACAGctcttttcttttccttttttcccCTTTGCAACTACCAGTATTCTGGTGGTACAAGGCATTACTGTACATTTGTCCCCCATCCCCCACTGACAGAAATCAAATGAACATAGATTTAGCAGTGGAGGGCCCAGCCTTCAAGCTAACCAAGGTGAGGCAGCATGTAAGCATCTCTCGCTATTCTTTCAAACAAGTCCTTCAGTTTATGATTTGTAACACTCGTGTCGGCCCCCTCTTAAAATGATTACCGCTTGCAGTCTTTCCTAAACAAAGGTCAGCGGATGTCCGACCGAGCTTCAGGGGGGTCTTTAAGATGAAGACCACGAATGTGTTCTTTCATCCAataacatacatatatatacacatatatatatatatatatatttatctctttacatatatatacacacacacgtatatagatttgtgtttgtttttctgttAGTCTGTTGGTTGTTGTTTAAACTACTTTGGTGACCGGGGGGGAATGTTCTGTTCCTTCCCGCTCCGTCTGGCCCAGCCCTGGGGGGAGATGCGGCGGCTCATGGACGCACCTCTCTGCTGATCCCAGTACTTTAGGCCCATCCCTCCGGATCGGGCAGGGCCATTAACCCCACAGTATGAGCCAAGGGGATCAAGGCGGGGCTGGCCTTCTCCAGGCCGCTCGGGTTTCTCAGGCCTATCCCCATCGCTGCTGGAGGAGGTGGCGGGCTCGTCGGCCTTGTTGACCCGCAGTTCACGCAGGGGTTGGCTGGCTGGGGAGGTGGGAGGGTTTGGGGAGGTGCTTGGCGCTGGGGGCTGGGTGGCTGGCCGCTTGCACATCTCAGCATAGCTCAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719579 lncRNA downstream 90 62222834 ~ 62223129 (-) True G632997
TU719572 lncRNA downstream 514 62222501 ~ 62222705 (-) True G632995
TU719570 lncRNA downstream 774 62221449 ~ 62222445 (-) False G632994
TU719591 lncRNA upstream 9755 62237766 ~ 62263594 (-) True G633006
TU719639 lncRNA upstream 76232 62304243 ~ 62304693 (-) True G633054
TU719984 lncRNA upstream 271479 62499490 ~ 62501459 (-) True G633347
TU719983 lncRNA upstream 275344 62503355 ~ 62504805 (-) True G633346
TU719985 lncRNA upstream 278987 62506998 ~ 62507384 (-) False LOC118965309
XR_002474207.2 mRNA downstream 37273 62175981 ~ 62185946 (-) True LOC110528170
XM_021609997.2 mRNA downstream 47728 62159975 ~ 62175491 (-) True LOC110528169
XM_021609996.2 mRNA downstream 47731 62159975 ~ 62175488 (-) False LOC110528169
XM_036983711.1 mRNA downstream 48764 62159975 ~ 62174455 (-) False LOC110528169
XM_036983710.1 mRNA downstream 302080 61800678 ~ 61921139 (-) False LOC110528991
XM_021608282.2 mRNA upstream 117071 62345082 ~ 62347315 (-) True LOC110527134
LOC110528993 mRNA upstream 121091 62349102 ~ 62349904 (-) True LOC110528993
XR_005052628.1 mRNA upstream 278228 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA upstream 278357 62506368 ~ 62520518 (-) False LOC118965309
XM_021610035.2 mRNA upstream 310322 62538333 ~ 62589746 (-) False slc4a8
TU719571 other downstream 1169 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 1541 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 531575 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1023781 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 1032174 61190708 ~ 61191045 (-) True G631740
TU719986 other upstream 280208 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 778764 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1557761 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 1557788 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1766505 63994516 ~ 63997239 (-) True LOC110528216

Expression Profile