RNA id: TU719983


Basic Information

Item Value
RNA id TU719983
length 1451
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G633346
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62503355 ~ 62504805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATCTAGATTTTGGTGGAGTGATGATCTTCATTAAGTGTTATGTAGTTAGCAAAGGGGAAGAAACACTTTTTCTGGACAAACATTGACATCCTGTGACAAAATGCAAATGACAACTTTCAGCCTGTAGTGCTCAAACATGAAAGCTTTGCTTGACGCCAGAGGTGAATGTCTACATCCATCAAATACCTTCCTATCAACGTAACCTAGAAATGACATTAGGTATGTTTCTGAAATGTCTTAACTCTATGTGACTATACACCTCAGTAACAGGTCCTTTCTCCAGACCCCCCTCTACTTTGTGTTTTCTATAGTAGCCGTGTACAGCTGCTGGGCCTCTATACACCTCACTGTGCCTATTATAATACTGATCTATTACCTCAGGACACAGTGGTGAAAACAACATCAGAGCCTCAAGAACCACCAAAAATATCACAACTGAAGAACCCCCTTTACTCTAAATATGCCCATTTTTCATAATATATGTTGTTTTTATGGCTATAGGTTAAACAGGGCATTGGATAAGCAACATAGTTattgaatatatttgcaaaataTGTTTATTCTGTAGCTAAGGGCTATTACTGTAGCTGCTTTGTTCCacgcagacagacatactgtacatgtccaAGGCTACCACATCATCCTGGGTATAAAGTGTGCCATATATGATATCCCtcttatacatttgcaaactgtTGGGGCTCAGAATCTCTATCTTTAACATTCAGttcaaatataatttaaaaatcCTTCCAGATCCAAAGAACATTAACAGTATTTTGCAGAGAGGTTGTGCTAGTAAGTGTCCTAGGTTACAGACCTTCATACATATTTCAGTTGTTTCAACAGCTCTTGAATCATCTGCACCAGAAAAACATTCACAATAACAAAATATGTACACAGTGGATTGCATCAGTGccaaataataatttaatataAACTTTTGTTAGCATTAAGCATTTACCTTTTTGTTAGCATTATAGAATTGTATCAGTTCTGAGTGCTGACTCTGTGAAGGGCTGAGGAAATAGTTTCACAATCCAGAAAATTGATGAACTGGAAAAGCGCTTAGCAACAAGTACATTAACACTCATAATGCAATGTGCATTAAGTCACAATTACTAATAATAAGGTTAGCCTGGCCTCCTTTTGTTGTTGTCCCAAGTTGATGTTCTTCAGCGTCATCAATATGAAGGTGTACGTGGAGATAAGTTTGTCCAACAAAAGTGGGATTTCAACACTATCTTTTTAATACAGTAGTATTATTATTGTATCTTGTACATTCTCTAGCCATTTCTACCTCATTTTTAAGACGGTCATGGAAATATTTATTTCCTGTTGTTTCACATGTCTGTTATGGAATAATGATGATTCTTGAACTGTTTTAGTCTACCTCACAAAAGgctattttaaaataaaaatgtttaatgGAAATGAAGAGATAATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719984 lncRNA downstream 1896 62499490 ~ 62501459 (-) True G633347
TU719639 lncRNA downstream 198662 62304243 ~ 62304693 (-) True G633054
TU719591 lncRNA downstream 239761 62237766 ~ 62263594 (-) True G633006
TU719577 lncRNA downstream 274908 62223219 ~ 62228447 (-) False G632996
TU719578 lncRNA downstream 275344 62223219 ~ 62228011 (-) True G632996
TU719985 lncRNA upstream 2193 62506998 ~ 62507384 (-) False LOC118965309
TU720071 lncRNA upstream 102307 62607112 ~ 62607360 (-) True G633425
TU720388 lncRNA upstream 113084 62617889 ~ 62618362 (-) False G633712
TU720387 lncRNA upstream 113188 62617993 ~ 62618485 (-) True G633712
TU720403 lncRNA upstream 116127 62620932 ~ 62621508 (-) True G633722
LOC110528993 mRNA downstream 153451 62349102 ~ 62349904 (-) True LOC110528993
XM_021608282.2 mRNA downstream 156040 62345082 ~ 62347315 (-) True LOC110527134
XR_002474207.2 mRNA downstream 317409 62175981 ~ 62185946 (-) True LOC110528170
XM_021609997.2 mRNA downstream 327864 62159975 ~ 62175491 (-) True LOC110528169
XM_021609996.2 mRNA downstream 327867 62159975 ~ 62175488 (-) False LOC110528169
XR_005052628.1 mRNA upstream 1434 62506239 ~ 62520518 (-) False LOC118965309
XM_036983722.1 mRNA upstream 1563 62506368 ~ 62520518 (-) False LOC118965309
XM_021610035.2 mRNA upstream 33528 62538333 ~ 62589746 (-) False slc4a8
XM_021610036.2 mRNA upstream 33528 62538333 ~ 62589748 (-) True slc4a8
XR_005052728.1 mRNA upstream 40179 62544984 ~ 62545127 (-) True LOC118965401
TU719571 other downstream 281305 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 281677 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 811711 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1303917 61198007 ~ 61199438 (-) True G631687
TU718213 other downstream 1312310 61190708 ~ 61191045 (-) True G631740
TU719986 other upstream 3414 62508219 ~ 62520510 (-) True LOC118965309
TU720546 other upstream 501970 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 1280967 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 1280994 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1489711 63994516 ~ 63997239 (-) True LOC110528216

Expression Profile