RNA id: TU720065


Basic Information

Item Value
RNA id TU720065
length 297
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G633419
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62605099 ~ 62605395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccagtccattgctcgtatttcttggcccaagtaagtctctttttcgtattattttttttctccacaattttgtgttatccaattggtagttagtcttgtctcatgcTGCAACTCCGTagagactcgggagaggcaaaggccGAGAGCcttgcatcctccgaaacacaacccagccaagccgcactgcttctagacacaatgcccacttcacccagaagccagccgcaccaatgtgtcggaggaaagaccgtacacctggcgaccgtgtcagcgtgcactgagCCCAGCCCGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU719929 lncRNA upstream 8210 62529960 ~ 62596889 (+) True G633296
TU719946 lncRNA upstream 38732 62555054 ~ 62566367 (+) False G633312
TU719947 lncRNA upstream 38732 62555054 ~ 62566367 (+) False G633312
TU719948 lncRNA upstream 38732 62555054 ~ 62566367 (+) True G633312
TU719908 lncRNA upstream 65608 62533222 ~ 62539491 (+) True G633275
TU720070 lncRNA downstream 1770 62607165 ~ 62607679 (+) True G633424
TU720072 lncRNA downstream 2776 62608171 ~ 62608381 (+) True G633426
TU720078 lncRNA downstream 16367 62621762 ~ 62622445 (+) True G633431
TU720090 lncRNA downstream 27356 62632751 ~ 62633041 (+) True G633443
TU720092 lncRNA downstream 31155 62636550 ~ 62636813 (+) True G633445
XM_021610033.2 mRNA upstream 122492 62366941 ~ 62482607 (+) False LOC110528177
XM_036983720.1 mRNA upstream 122492 62366941 ~ 62482607 (+) False LOC110528177
XM_036983721.1 mRNA upstream 122492 62388091 ~ 62482607 (+) True LOC110528177
XM_036983716.1 mRNA upstream 263080 62327707 ~ 62342019 (+) False LOC110528175
XM_021610041.2 mRNA downstream 235520 62840915 ~ 62843329 (+) True LOC110528183
XR_005052713.1 mRNA downstream 255154 62860549 ~ 62864970 (+) True LOC110528184
XM_021610042.2 mRNA downstream 270629 62876024 ~ 62878348 (+) True LOC110528186
XR_005052629.1 mRNA downstream 273740 62879135 ~ 62881941 (+) False LOC118965310
XR_005052630.1 mRNA downstream 383086 62988481 ~ 63012558 (+) True LOC118965311
TU719409 other upstream 263134 62340021 ~ 62341965 (+) True LOC110528175
TU719361 other upstream 276038 62245920 ~ 62329061 (+) True G632817
TU719353 other upstream 373750 62230515 ~ 62231349 (+) True G632809
TU719313 other upstream 465108 62139516 ~ 62139991 (+) True G632776
TU718637 other upstream 913452 61691281 ~ 61691647 (+) True G632146
TU720268 other downstream 324003 62929398 ~ 62929699 (+) True G633613
TU721299 other downstream 1014958 63620353 ~ 63621531 (+) True LOC110528206
TU721636 other downstream 1590646 64196041 ~ 64201232 (+) True LOC110528222
TU722203 other downstream 1712805 64318200 ~ 64326259 (+) False G635332
TU722204 other downstream 1712805 64318200 ~ 64326259 (+) True G635332

Expression Profile