RNA id: TU720494


Basic Information

Item Value
RNA id TU720494
length 1246
lncRNA type intronic
GC content 0.41
exon number 4
gene id G633809
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62811424 ~ 62812920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggagcattctctcactgtctcaacaggtgatattcctgtttgaggagtaTGCCGTCACTGTCTCAACAGgtgatattcctgtttgaggagcatgctctcactgcccCAACAGGTGATATTCTGCCATGtgctctccaaccttgttcctgcagctacccagtactaaATTTAGGAAACCAATTGAAATCTGTTTGTGAACattgatagtaacatgttttcacattgaAACATATTTCACTAAATTGACAGCCCGTCAGCATGCTGGAGAaaggaataaaggagagaggagcatttcactacacccgcaataacatccgctaatcacgtgtatgtgaccaataacatttgatttggaaatgcatggtggtgagatattctgtatagctaaaggtaatgtgtcacccaattaattatgaaaatataaaaatTCCCTATTAAGCTATtcaaaccaaacaaaccaaatacaaattcactaattgtaggctaactgtaAGCCGCACTGCACAAttaatgaaccaacagcatcgcctagactcgttctctcccagactcatagATAGCAGTTTTAGAgtgtagcataaggtaaccagtccatccagtatgcataataatacagtccacactcaaaagGCGTTTACTCAAATTGTTTAATTTTGgagtataggctagaccaattatgtaccgaAGACCTCTTAAATCAGTTTTGGTTTATGTTTTTCTGCTATGTGTAATATGTGGTAGGCTATGTATTGGCTATAACTCCAGTATGTAGATAGGAGGCAGGGCACAATCATAATTTGTGTTGAGTTTTTGTTTTTTCAGGCTTGATTCATTCAGAACTTCCAtacagcaaagcatccccaaaccatcacactaccaccaccacgcttcaccgttgggatgagGTCCTTACTGTGGaatcatcacactaccaccaccacgcttcaccgttgggatgagGTCCTTACTGTGGaatcatcacactaccaccaccacgcttcactgttGGTATGAGGTCCTTATGGAATGTTTGGTTTTTgaccaggcataatgggacccatgtttTCCAAAAAGTTTtacttttgactcatctgtccatagaccattcttccaagagtcttgatgatcatctaGGTGCTTCCAGGTACTTTTTGGCAAACTTTTTGGATgagaaaaaccaaacactgcattccacagtaagaacctcataccaacggtcaaacatggtggtggtagtgtgatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU720390 lncRNA downstream 163698 62647021 ~ 62647726 (-) True LOC110528182
TU720409 lncRNA downstream 179263 62631926 ~ 62632161 (-) True G633728
TU720386 lncRNA downstream 189280 62621818 ~ 62622144 (-) True G633711
TU720403 lncRNA downstream 189916 62620932 ~ 62621508 (-) True G633722
TU720387 lncRNA downstream 192939 62617993 ~ 62618485 (-) True G633712
TU720393 lncRNA upstream 27972 62840892 ~ 62843326 (-) False G633715
TU720396 lncRNA upstream 27972 62840892 ~ 62881773 (-) False G633715
TU720395 lncRNA upstream 49608 62862528 ~ 62881773 (-) True G633715
TU720555 lncRNA upstream 114635 62927555 ~ 62927951 (-) True G633865
TU720567 lncRNA upstream 126749 62939669 ~ 62939896 (-) True G633877
XM_021610037.2 mRNA downstream 194682 62612769 ~ 62616742 (-) True LOC110528181
XM_021610036.2 mRNA downstream 221676 62538333 ~ 62589748 (-) True slc4a8
XM_021610035.2 mRNA downstream 221678 62538333 ~ 62589746 (-) False slc4a8
XR_005052728.1 mRNA downstream 266297 62544984 ~ 62545127 (-) True LOC118965401
XM_036983722.1 mRNA downstream 290906 62506368 ~ 62520518 (-) False LOC118965309
XM_021610044.2 mRNA upstream 69366 62882286 ~ 62900930 (-) False LOC110528187
XM_036983732.1 mRNA upstream 69366 62882286 ~ 62900930 (-) True LOC110528187
XM_021610047.2 mRNA upstream 170199 62983119 ~ 63008040 (-) False si:dkey-28n18.9
XM_036983740.1 mRNA upstream 170199 62983119 ~ 63008053 (-) False si:dkey-28n18.9
XM_036983739.1 mRNA upstream 170199 62983119 ~ 63008072 (-) False si:dkey-28n18.9
TU719986 other downstream 290914 62508219 ~ 62520510 (-) True LOC118965309
TU719571 other downstream 589374 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 589746 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 1119780 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1611986 61198007 ~ 61199438 (-) True G631687
TU720546 other upstream 193855 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 972852 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 972879 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1181596 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 1219526 64032446 ~ 64035381 (-) True G635167

Expression Profile