RNA id: TU720395


Basic Information

Item Value
RNA id TU720395
length 1389
lncRNA type read_through
GC content 0.42
exon number 2
gene id G633715
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 62840892 ~ 62881773 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGATCCGACCAAATAATTCCTCTCACAACGCTCACATTACAAACATGCTGAGAGAAACTGCTATGAATCTGCCAGGGGAGAGCGGTGCAGAGGAACAGGATCTCTGAGAGAATAGTAATATACCTGGGGTGAGGGGTCTGAAGATGGATATGACCAGATGGAGGGTAGTAGGAGGTTGTGGATGTGGTGGGTTGCTGCTGAGTGCATGTCTTCAGCACTAGCGGAGTGCCATCAATCCCTTCTATCTGTTTAGAAAGGTGTCTTATTGCTCTGTGAACTGTATAAAGGCAGTAGATTAGGGGACTGTGTTAACCAAGAGGTTATGACTTTACTGTGTGAGAATAATAGTCAATACTGAGCTGTAAAAGATCGAAATGAGAAAGACCAGTGCAGCTCGTTTTGGTAATATTTTTCATGTATCAAATGGATTTGTGAGTCTGTGCTGCCCTCTAGTGGGTATTACAATAAAGCCCTTGTGAGCACTAAGCACTGAATATGAGAAGTAATGTGCTTCTTTGTATGAAAAATACTGTACCTAAATATGAGAAAATATAtgtaacattatttttttttaaatgtagaaatAGCTGTTCATGGAAACAATggatactgagtgtacaaaacattaagaacaccttcctaatgttgagtagtgcccccttttgccctcagaacagtctcaactCATTGGaccatggactccacaaggtgtcaagcatttcacagggatgctggtccatgttccctccaatgcttcccacagttgtgtcaagttggctggatgccctttgttTGGGtattggaccattcttgatacacacaggaaactgttgagcaggAAAAACCCAGCAaagttgcaattcttgacacaatgtctcaccctgaccatagtttgctttgtatgtttctatgttttgtttggtcagggtgtgatctgagtgggcattctatgttggatgtcttgtttgtctgtttctgtgtttgggcctgatatggttctcaatcagaggcaggtattagtcattgtctctgattgggagccatatttaggtagcctgttttgtgttgggttttgtgggtggttgtctcctgtgtcagtgtttgtaccacacgggactgtttcgggtcttcacgtttcttgttttgtagtttattcatatatagtttcattattaaagaaccatgaattataaccacgctgcattttggtccgcctctccttcccaggaggaaTCCCGTTACACACAAACCAGTGCCCatggcacctactgccataccctATTTGAATTCAcatcaatcttttgtcttgccaaatcattctgaatggcacatatacataatccatgtctcaattgtctcaaagcttaataatccttctttaacctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU720393 lncRNA downstream 19202 62840892 ~ 62843326 (-) False G633715
TU720494 lncRNA downstream 49608 62811424 ~ 62812920 (-) True G633809
TU720390 lncRNA downstream 214802 62647021 ~ 62647726 (-) True LOC110528182
TU720409 lncRNA downstream 230367 62631926 ~ 62632161 (-) True G633728
TU720386 lncRNA downstream 240384 62621818 ~ 62622144 (-) True G633711
TU720555 lncRNA upstream 45782 62927555 ~ 62927951 (-) True G633865
TU720567 lncRNA upstream 57896 62939669 ~ 62939896 (-) True G633877
TU720568 lncRNA upstream 58582 62940355 ~ 62940557 (-) True G633878
TU720570 lncRNA upstream 59816 62941589 ~ 62941908 (-) True G633880
TU720585 lncRNA upstream 85872 62967645 ~ 62967914 (-) True G633895
XM_036983726.1 mRNA downstream 40103 62648166 ~ 62822425 (-) False LOC110528182
XM_021610044.2 mRNA upstream 513 62882286 ~ 62900930 (-) False LOC110528187
XM_036983732.1 mRNA upstream 513 62882286 ~ 62900930 (-) True LOC110528187
XM_021610047.2 mRNA upstream 101346 62983119 ~ 63008040 (-) False si:dkey-28n18.9
XM_036983740.1 mRNA upstream 101346 62983119 ~ 63008053 (-) False si:dkey-28n18.9
XM_036983739.1 mRNA upstream 101346 62983119 ~ 63008072 (-) False si:dkey-28n18.9
TU719986 other downstream 342018 62508219 ~ 62520510 (-) True LOC118965309
TU719571 other downstream 640478 62221272 ~ 62222050 (-) False G632994
TU719566 other downstream 640850 62221272 ~ 62221678 (-) False G632994
TU718974 other downstream 1170884 61691248 ~ 61691644 (-) True G632459
TU718160 other downstream 1663090 61198007 ~ 61199438 (-) True G631687
TU720546 other upstream 125002 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU721875 other upstream 903999 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other upstream 904026 63785799 ~ 63791832 (-) False LOC110528212
TU722010 other upstream 1112743 63994516 ~ 63997239 (-) True LOC110528216
TU722013 other upstream 1150673 64032446 ~ 64035381 (-) True G635167

Expression Profile