RNA id: TU722013


Basic Information

Item Value
RNA id TU722013
length 1756
RNA type TUCP
GC content 0.47
exon number 6
gene id G635167
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 64032446 ~ 64035381 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGTAGGGGATGCGGGCAGTTCGAGTTATAGTTCACCGTTTAAAACGCTCGCTTAGTCCGCGCAAAATTATTACCTCAAAATTGCTCTCTAAGGACGGTGTATTTGACGGTGACTACCTGCTGCCTCAGAGGACTGGAAAGAGAACACTTTCTTTACCATGTATTTGTACATATTGTCAAATAGGAATACATAATTTGTTGTTTTTATAGATCAACGTTGCTAGATACTGTACTTCTATACCTCAGCATGCCTAGCCAGACAGTTTTATTTAgctaagctaacgttagctagctagatagcaagCAAGCTACTATAACTGTTGTTGCAGCTTTCTGTTTGTATGTAGCTTGCGCTTCAATGGCAACCCTCGAGGAGATTTTCTTTTATCTTTCCAACCTGAGGAAGTACTATGAAGACACCACTGATGTCGACAAGAGGCGCAACATTCAGAGAAATTCAGGGTCAGTACCCTGTCTAGCCTGCCAGAAGCTTGAGAGGGCGAAGACTGGCACTGGAGATAAAGCCCATCAAAGTTGTTTCACCATGGCACATGATCGGGGTGGAACTCATTGGACCCTTCACGAAATCCAGGAATGGCAACAGCTGGTGTCTTCCAGCGACCGATCACTTTCCAAGTGGGTGGAGGCAATGCCCATTAAGGACGAGACTAGCGAGGCCACCTCCAAGGCGATAGTGGACTATCTTCAGCACCCACGGTTCTCCTGAGGTCATCTTGAGTGACCGAGGTCATGAACAAGGTTTGGTGGATGGACAAACCAGACCCTCAACACTGCCATGGGCAAGTCCCTTGATACCAGGAAGGCTGGGAGAACAACCTGAAGATCTCTGAAACCCCACCTGATGTGGTGGAAGTTGTCGATCCAGATTAGAACGCCTTCGAGTACCACCTTCAGGCACAGACTGAGAAGGATGTTGTTACGACTtctaggagtcaggcgcagagagcagagggtaaAGGACAACTGTATTTATTCCGGAGAAAAGTAGGTCACGCCAAAACACCAGGCGCATACAATGACCGGCCCAAAAACAGGACACAAACAAACAGTCCGGAGAAATACAGAAAATATCACATCcacaaaacaaacagagaaacAAGCCCACACTAAAGCCGGCGGGCTTACTGGGTTTAAATAGCTCACAATCACAACCTAAACAcaaaacaggtgcaactaatcagacacaactaaatgaaacagaaaaggggatctgtggcagctagtaggcctggcgacgacgaccgccgagcgccgcccgaacaggaagaggcaccatcttcggcgggattcgtgacagatGTGGAGGTTTTTGACCAGGAAAAGTGATTGCCCGCTGTTAATTTATGTTGTAACGCTGCAGTAATCCATCAAATTTTCTCACAGTAAAGTGTaacctgtgtgtttgcttgtttactTCTCTGTCTCCTACCCTTTTCATTTTaactctgctcctgttctccagtacctaggggttctgcccaacacccagacgTGGATCCACCTTATGTCCTCCATTACCAACCACCCTCCAACTTTTCATTACGTCATCTACAGctactgttgttgtcatgttgtcattaTCTGCTAAGAGTTTTCTTGCTCTTATCATTCTGGGCACATTATATGTGAGATCCACAGATGAACTAAAAACACTAGCACTGCAAACACTCAGAACAAAGAGAGCAGCAGTTCCTGGACTTTGCTGTCTCCCTCTTCAAGTCCCCCTTctgagact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU721915 lncRNA downstream 189893 63842330 ~ 63842553 (-) True G635084
TU721913 lncRNA downstream 192495 63839744 ~ 63839951 (-) True G635082
TU721911 lncRNA downstream 194263 63837957 ~ 63838183 (-) True G635080
TU721910 lncRNA downstream 195144 63837064 ~ 63837302 (-) True G635079
TU721880 lncRNA downstream 237117 63785799 ~ 63795329 (-) True LOC110528212
TU722032 lncRNA upstream 2182 64037563 ~ 64037887 (-) True G635186
TU722033 lncRNA upstream 3175 64038556 ~ 64038827 (-) True G635187
TU722099 lncRNA upstream 97823 64133204 ~ 64140851 (-) True G635244
TU722101 lncRNA upstream 101620 64137001 ~ 64144757 (-) True G635246
TU722160 lncRNA upstream 196369 64231750 ~ 64252302 (-) True LOC110528224
XM_021610076.2 mRNA downstream 8716 63993536 ~ 64023730 (-) False LOC110528216
XM_021610075.2 mRNA downstream 8718 63993536 ~ 64023728 (-) False LOC110528216
XM_021610074.2 mRNA downstream 69683 63900937 ~ 63962763 (-) False LOC110528215
XM_036983809.1 mRNA upstream 15283 64050664 ~ 64065462 (-) False LOC110528217
XM_036983810.1 mRNA upstream 15283 64050664 ~ 64065789 (-) False LOC110528217
XM_036983811.1 mRNA upstream 15283 64050664 ~ 64083358 (-) True LOC110528217
XM_021610095.2 mRNA upstream 197785 64233166 ~ 64252381 (-) False LOC110528224
XM_036983813.1 mRNA upstream 197785 64233166 ~ 64252405 (-) False LOC110528224
TU722010 other downstream 35207 63994516 ~ 63997239 (-) True LOC110528216
TU721875 other downstream 239666 63785772 ~ 63792780 (-) False LOC110528212
TU721871 other downstream 240614 63785799 ~ 63791832 (-) False LOC110528212
TU720546 other downstream 1024406 63006775 ~ 63008040 (-) True si:dkey-28n18.9
TU719986 other downstream 1511936 62508219 ~ 62520510 (-) True LOC118965309
TU723004 other upstream 282813 64318194 ~ 64326230 (-) False G636055
TU723007 other upstream 282813 64318194 ~ 64326230 (-) False G636055
TU723011 other upstream 282813 64318194 ~ 64326230 (-) False G636055
TU723012 other upstream 282813 64318194 ~ 64326230 (-) False G636055
TU723015 other upstream 282813 64318194 ~ 64326230 (-) True G636055

Expression Profile