RNA id: TU723574



Basic Information


Item Value
RNA id TU723574
length 2376
RNA type TUCP
GC content 0.39
exon number 2
gene id G636571
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65209760 ~ 65236881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctctgaatatatatatgtatgtaccaCATTACAAAAACTCACAAATATAAAGTATTTATGTTATAAGTATACACACGTCACAAACAAACATAGAACATTTTTGTATAAATCTGTATACTGTGTTAGAACGCTGAAGTGCTCTTAGCTGCTCgtccttttgtcacatttcactGTGTAATGACTTAAGAAATCACTTGAAGTTCATTTCaagaacaaaataaaaataactacATTTTATAAAACTGCACACACTCCTCCTGAAGGAGTGTGTGTAAGGCAACCCTTACATTAGCAGATGTTTATAGAATCACACAGTTAAGGATAAGGATAGTAAGCTATAGAGCATTAAGGGATACGTTTGAGTGGATCCATGTTACAGCTATAGTGTGAAACTTAATACTCTCCCACATTCAAAAAATGAAATGTATTCTATGATTTTTATCCCTAGACTATTCTTAGGCTATTCCAAACCATGAGATTCCTAACCTCCGTTTTCAAGTAACTCTTGGTATGCACATTTTAATTTCAGCCAATCAAACTTCACCAAGTCTGTTCTAATGTTTTGTCATCTGGTTGTTGCCGACATCAAATGAATAGATTTACAGAGTTTCTATCAGTGAGATGGTTGAAAGTCTTCAACTTTTTTAAAGGCACTTTTTAAACATTGTAATTCTGCTGGCATTTTTCTCTTTTTAAGGACTCATTCCTATAAAGTTCTAAGGGGAAAAAAATTGTTTCAGTGATATGATTCTCTTGCCATTACAAAACCGCAATACTTGTTGCATTGTGGCATGAGTAAAACTTATGACACCTtttaaaaggtccaatgcagccatttttatctcaatatcaaataatttctgggttaCAATTAAGTAAGTACCCTACTGTGATATTTTTCAATTACaatggtaaaaaaataaacaaaaatagcttcttagcaaaaagcaatttctcaagcaagaattttgggTAGGGAgggaaaaactgaaaactagctgttattggcagaaaggtttagaactctctttcttattggtctattaactaatttaccacctggcaatgtcaccaggcaggccaaaactccacccCACCAAAACAAGATGAAATTTCAGGCAGCTCTTACActgaaagggcattatcataattttaacaatttcacagtattattccatcctcatagtgtgaaaatataaatataaacacaggaaaatcacatttttgactgcactgggcctgtaAAGTACATTAAGGCTTTGTGGTTGATGAGCTGTAAATGTCACAACAATAGCCAGCTGTCACTGCAGACAGATAGACAGCTACCCTTTGGTCCGACCTTCTATAGGTGTAAATGTGTGGTATCAGGACTACAAatggctattattattattattattattattattatggtttCACTGAAAATACTCACTTTGAAATGTAGGACGCAACAGTTGTCTTTGAGAAAGGCTAGTGGACTGGAGACTCCAGCGTTTGACACTGTTGGCCTCCCTATGTGTCAACTTTGAACAGCTACTAAATTAAGTTGTGTTGGGATTTGGAAAATCAATAGGATTTTTGAGAACTTAGGTTTAAGTGGGTGTTCAGGTGTGAACATGCCTGCTTTTTCCCCTCAGAGCTGTACATACACACCAATTGTCTCTCAATATTTTGTAGCGTGCaaaaacacaaacatacacattttTTTGCATAGCGATAAAGCCACTCTACAAAGTCACACTTACAAAAGAGACCAACAACTAGAAATGTTATCTcatgtcttcctctctcttgttGAATGCATTGTCCAGGATAATTCCACAGATTGGAAAATAAACATCCAATTCTGTCACCCACAGGTTTTTGTTATTAAACTAAATGTGAGAAAAATACAGTCTAAGTCCTCACTTTTAGACACTGGACCAGAGGCAGAATCAGACACTTTTCATCAAGTCAGTGCACTGGAAGGGGAGATGCCACTTCAGTGGGGGGGGTCCTATAAGTCCCAAATGTAATGGACACAGACAACGGCCCCCTATTCACCTCCTCAGTTTATCATATTTTTGTCCCCTCAGCATCATCACTTAATCATCCCTCTTCATCTTTTTGTCTGTCTTTTCAGAAAGGTAAGGTATCCATGAAGATTTTGTCTACGATGGGTGGTGGAGGGACCAAGTCCTCCAGCTTCAGGTAGAAGATGCGCTGCAGGCCTTGGGTGCAGAGGGTGCGCAGCTCGGGGAGCTTCCCTAGCAGACGGGACAGGAAGTTGGGCTGGGGCCGCCCTGCGTCGGAGCCACTGCCGGCCACGTGGTCCCTCAGACAGGTTATGAGGCGGTTCTGGAACTCCTCCACCCGTTTGGGCTCTTTAAGGCCATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU723570 lncRNA downstream 34350 65199935 ~ 65200134 (-) True G636567
TU723563 lncRNA downstream 44520 65189731 ~ 65189964 (-) True G636560
TU723560 lncRNA downstream 49500 65184663 ~ 65184984 (-) True G636557
TU723466 lncRNA downstream 74360 65159714 ~ 65160124 (-) True G636471
TU723467 lncRNA downstream 81188 65152091 ~ 65153296 (-) False G636472
TU723662 lncRNA upstream 40643 65277524 ~ 65281548 (-) True LOC110528260
TU723605 lncRNA upstream 88310 65325191 ~ 65327053 (-) True LOC110528264
TU723600 lncRNA upstream 91513 65328394 ~ 65329081 (-) True G636594
TU723607 lncRNA upstream 93050 65329931 ~ 65330208 (-) True G636601
TU723598 lncRNA upstream 93682 65330563 ~ 65335609 (-) True G636592
XM_021610164.2 mRNA downstream 69772 65161964 ~ 65164712 (-) False LOC110528257
XM_021610165.2 mRNA downstream 69772 65161964 ~ 65164712 (-) True LOC110528257
XM_021610149.2 mRNA downstream 187965 64987665 ~ 65046519 (-) True LOC110528252
XR_002474223.2 mRNA downstream 187966 64987665 ~ 65046518 (-) False LOC110528252
XR_005052637.1 mRNA downstream 244841 64987665 ~ 64989643 (-) False LOC110528252
XM_021610171.2 mRNA upstream 43472 65280353 ~ 65288559 (-) False LOC110528260
XM_021610172.2 mRNA upstream 43472 65280353 ~ 65288559 (-) False LOC110528260
XM_021610173.2 mRNA upstream 43472 65280353 ~ 65288560 (-) False LOC110528260
XM_021610177.2 mRNA upstream 71367 65308248 ~ 65323306 (-) False LOC110528263
XM_021610178.2 mRNA upstream 71367 65308248 ~ 65323307 (-) False LOC110528263
TU723536 other downstream 98689 65135538 ~ 65135795 (-) True G636533
TU723535 other downstream 99739 65134250 ~ 65134745 (-) True G636532
TU723292 other downstream 562468 64670850 ~ 64672016 (-) True LOC110528239
TU723175 other downstream 710303 64522514 ~ 64524181 (-) True LOC110528235
TU723012 other downstream 908254 64318194 ~ 64326230 (-) False G636055
TU723769 other upstream 256909 65493790 ~ 65495157 (-) True G636719
TU724613 other upstream 644131 65881012 ~ 65882556 (-) True G637495
TU724622 other upstream 650055 65886936 ~ 65892402 (-) True G637504
TU724820 other upstream 939079 66175960 ~ 66177895 (-) True G637669
TU724874 other upstream 1039901 66276782 ~ 66277080 (-) True G637722

Expression Profile


TU723574 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU723574 Expression in each Bioproject

Bar chart with 20 bars.
TU723574 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.