RNA id: TU724534


Basic Information

Item Value
RNA id TU724534
length 288
lncRNA type intronic
GC content 0.53
exon number 2
gene id G637424
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 65735012 ~ 65735349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttttccccctcaggagactgtcgagagcatcctgaccggttgcatcaccgcctggtatggtaactgctctgcatctgaccgtaaggcgctacagagggtagtgcgtatggcccagtacatcactggggccaagcttcctgccatccaggacctatataataggcggtgtcagaggaaagcccatagaATTGTCAAGATATCaggtcacccaagtcatagactgttttcctGCTACCTCACGGctagtggtaccggagcgccaaggctaggaccaaaaggttcctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU724519 lncRNA downstream 18570 65716216 ~ 65716442 (-) True G637412
TU724510 lncRNA downstream 29783 65705020 ~ 65705229 (-) True G637403
TU723833 lncRNA downstream 145076 65586604 ~ 65589936 (-) True sox12
TU723776 lncRNA downstream 156623 65499217 ~ 65578389 (-) True G636722
TU723774 lncRNA downstream 221099 65498708 ~ 65513913 (-) True G636721
TU724551 lncRNA upstream 24124 65759473 ~ 65759694 (-) True G637441
TU724562 lncRNA upstream 38360 65773709 ~ 65774110 (-) True G637452
TU724564 lncRNA upstream 40839 65776188 ~ 65776425 (-) True G637454
TU724573 lncRNA upstream 50220 65785569 ~ 65796063 (-) False LOC110528277
TU724574 lncRNA upstream 50220 65785569 ~ 65796063 (-) False LOC110528277
XR_005052638.1 mRNA downstream 47026 65681451 ~ 65687986 (-) True LOC118965313
XM_021610202.2 mRNA downstream 141683 65586599 ~ 65593329 (-) False sox12
XM_021610196.2 mRNA downstream 256699 65467736 ~ 65478313 (-) False LOC110528269
XM_021610197.2 mRNA downstream 256699 65467736 ~ 65478313 (-) True LOC110528269
LOC118965360 mRNA downstream 277752 65451173 ~ 65457260 (-) True LOC118965360
XR_002474225.2 mRNA upstream 51592 65786941 ~ 65796175 (-) False LOC110528277
XM_021610213.2 mRNA upstream 76092 65811441 ~ 65857952 (-) False LOC110528278
XM_021610214.2 mRNA upstream 76092 65811441 ~ 65857952 (-) True LOC110528278
XM_021610218.2 mRNA upstream 132144 65867493 ~ 65871583 (-) False LOC110528280
XM_036983865.1 mRNA upstream 132144 65867493 ~ 65871588 (-) True LOC110528280
TU723769 other downstream 239855 65493790 ~ 65495157 (-) True G636719
TU723574 other downstream 498131 65234484 ~ 65236881 (-) True G636571
TU723536 other downstream 599217 65135538 ~ 65135795 (-) True G636533
TU723535 other downstream 600267 65134250 ~ 65134745 (-) True G636532
TU723292 other downstream 1062996 64670850 ~ 64672016 (-) True LOC110528239
TU724613 other upstream 145663 65881012 ~ 65882556 (-) True G637495
TU724622 other upstream 151587 65886936 ~ 65892402 (-) True G637504
TU724820 other upstream 440611 66175960 ~ 66177895 (-) True G637669
TU724874 other upstream 541433 66276782 ~ 66277080 (-) True G637722
TU726292 other upstream 1320305 67055654 ~ 67079059 (-) True LOC110528300

Expression Profile