RNA id: TCONS_00000031


Basic Information

Item Value
RNA id TCONS_00000031
length 1682
RNA type mRNA
GC content 0.53
exon number 12
gene id XLOC_000015
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 227241 ~ 243798 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGGACGCCGCCAAGCTCAGTTTGACTGAGTGCGGAGCTGCTGAAGTGGCTCATCCTGACGAGAAAAGCTCCTCGATCCTCCCGGAAAACATCACCTGTGGACGGGAAGATGAAGCGGTTGTAAGCTCGAGCTCTCGctgaaCTGCAGTCTGACCGGTGGTGGACTCTCGCTCAGCTCATCTGCtccatcttcatcatcttcatcatggCGAAAGATGCTGGACTCAAGGAAACGAATGGAGAGATTAAGCTGTTTATCAACCAGAGTCCTGGAAAAGcTGCAGGTGTGCTTCAGCTGCTGACTGTTCATCCAGCGTCCATCACTACAGTCAAGCAGATTCTGCCTAAAACTCTGACGGTCACTGGAGCTCATGTGCTGCCACACATGGTGGTCAGCACCCCTCAGAGGCCCACCATCCCCGTCCTGTTGACCAGTCCACACACACCTACAGCACAGACGCAGCAGGAGTCCTCGCCCTGGTCCAGCGGgcactGCAGGAGGGCTGATAAGAGCGGGAAGGGTTTGCGTCATTTCTCTATGAAGGTGTGTGAGAAGGTGCAGAAGAAGGTGGTGACGTCCTACAATGAGGTGGCAGACGAGCTGGTGCAGGAGTTCAGCTCTGCAGACCACAGCAGCATCTCCCCCAATGATGCGGTcagttcctgtCACGTGTACGACCAGAAGAACATCCGGCGGCGGGTTTACGACGCCCTCAACGTCCTCATGGCCATGAACATCATCTCCAAAGACAAGAAGGAGATCAAGTGGATTGGCTTTCCCACCAACTCAGCGCAGGAGTGTGAGGATCTGAAGGCTGAGCGTCAGAGGCGACAGGAGAGAATCAAGCAGAAGCAGTCTCAGCTGCAGGAGCTCATTGTGCAGCAAATCGCCTTCAAGAACCTGGTTCAGCGTAACCGTGAGGTGGAGCAGCAGAGTAAGAGATCTCCATCTGCAAACACCATCATCCAGCTGcccttcatcatcatcaacacCAGCAAGAAGACCATCATCGACTGCAGCATCTCTAATgacaaGTTCGAGTATCTGTTCAACTTCGACAGCATGTTCGAGATCCACGATGATGTGGAGGTGCTGAAGCGGCTGGGTCTGGCGTTGGGTCTGGAGTCGGGCCGCTGCAGTGCGGAGCAGATGAAGATCGCCACATCACTGGTGTCTAAAGCTCTGCAGCCCTATGTCACCGAGATGGCGCAGGGCTCCGTCAACCAGCCGATGGATTTTTCCCATGTGGCTGCTGAGCGCCGCGCCTCCAGCTCCACCAGCTCACGTGTGGAGACGCCCACATCCCTGATGGAGGAGGACGaggaagatgaagaagaagactACGAGGAAGAGGACGACTAGAGCTGCACGCTGTGATCCTGCTGTAAGGATTCCCTCAAACGCTTCCCATAATGCTCAGCTCAGTCTGTGATCTGCTGGGGCTTATGAGCAGATGAGCTGGACTGATCGTCTTTGTGCTACTGATTCACGCCAGCGCTGAGGTTTTTACACTCTTCTCTTGTGGTTTCGCTCTCATAGGCAGCTATTTTTGATATCCCAGCTTTTTCTGGACGCTTCTCCACAGCTCTGAGCAAGCGTCCGGCCCTTTTGTACAATGCAATACTACAGAACGTATACTTTTCTTATTCTTGTATAGAGATTAAAGTGAAAGGTTGATtt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1746 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of cell cycle and regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in adaxial cell; alar plate midbrain region; nervous system; and optic vesicle. Orthologous to human TFDP1 (transcription factor Dp-1).

Ensembl:

ensembl_id ENSDART00000003317

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002801 lncRNA upstream 4437 221385 ~ 222804 (+) True XLOC_000014
TCONS_00003002 lncRNA upstream 69959 156792 ~ 157282 (+) True XLOC_000011
TCONS_00000021 lncRNA upstream 94026 127266 ~ 133215 (+) False XLOC_000008
TCONS_00000023 lncRNA upstream 96020 130627 ~ 131221 (+) True XLOC_000008
TCONS_00000022 lncRNA upstream 97650 127300 ~ 129591 (+) False XLOC_000008
TCONS_00003003 lncRNA downstream 113774 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA downstream 114064 355771 ~ 358562 (+) True XLOC_000018
TCONS_00000055 lncRNA downstream 338981 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003005 lncRNA downstream 553269 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 553269 794976 ~ 911551 (+) True XLOC_000026
TCONS_00000030 mRNA upstream 2104 218524 ~ 225137 (+) False XLOC_000014
TCONS_00000028 mRNA upstream 44983 176583 ~ 182258 (+) False XLOC_000013
TCONS_00000029 mRNA upstream 44983 176586 ~ 182258 (+) True XLOC_000013
TCONS_00000027 mRNA upstream 59843 158034 ~ 167398 (+) True XLOC_000012
TCONS_00000026 mRNA upstream 69105 157793 ~ 158136 (+) False XLOC_000012
TCONS_00000033 mRNA downstream 3369 245076 ~ 258138 (+) True XLOC_000016
TCONS_00000034 mRNA downstream 18332 260039 ~ 296055 (+) False XLOC_000017
TCONS_00000035 mRNA downstream 18332 260039 ~ 296057 (+) False XLOC_000017
TCONS_00000037 mRNA downstream 25328 267035 ~ 269883 (+) False XLOC_000017
TCONS_00000038 mRNA downstream 36024 277731 ~ 280259 (+) False XLOC_000017
TCONS_00000003 other upstream 213984 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000036 other downstream 18333 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000047 other downstream 272306 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000052 other downstream 295882 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000053 other downstream 334737 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 976984 1218691 ~ 1218805 (+) True XLOC_000029

Expression Profile

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