RNA id: TU724845


Basic Information

Item Value
RNA id TU724845
length 1358
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G637694
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 66212119 ~ 66213476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCTGTCAGACAAACGGTTGAATCCATATTCAATAGCTTTTTTACAATCTGATCACTTTTCAATAAATAACTTTTGTTGAGAGATCCTCAGTTTGTCACTTCTTGCACCTCATGACAATAAATGTTTAATTTGAAGCATCCCCTTAGAGAGCATAATATATATTCAATGTCCTTTATTTACTTGAATGACTGATGACATATTGGAACGAATGTCATCTTAAGTGAAATTCTGTATCAACTCAACAAATCCAGTCTATGCATCAATGGGTGTGTGCTTCCCTCAATTATTTTGCCCAAGTTGATCACATAACTGTTGCACCACACTGTGTTGTAAATAAGTAATACACAAAATCAATACCTTTTAATCTGTAAGGTTTCATCACTAGCAGGAGTTTACAACAGGGGTTAATGACATCAGTATGGGTTGAAAATAGTATTAGGAGAATGCTGCTTACGCACAAACAGCCCACGAGGAGAGTTTGTGAGGTTCAAATGATCTGTTcagtgagagagagcttttctatTGGCTTGTAAACTGATTCAGAGTTTTAGTTTTGTTTTGGTAGCAGTCCTGCCCAGCAGCTGAGAGCATTATGGATCCCCTAAGACTAAGAGCATGTAGCCTTCTGTATTTAGAGAGGAGCAATGAGAGCCAGTGATGTAGCAGAGATGGCCGTCTTCTGGCATCACACAGGTCTTCAAGGTACAGAAGGGCCTAACACTCTCCATCAAAACATGGggtttggtttggaaagacaAAGCCCCAGTGTTTATTTTAGTGCATGTTACGGGGTAACGTTACACCGCATGATGCATCCCAAAGGCAGGGCAGACACTAAGCTGTCAGCCAGTGATCCCCGTAAAGCCTGTTGTTACTCCACTGAGGTGGTGCCTGGCCATGCTGAGAGACCTTGACGCAGAGGTGCAAAGCCCTGAGCCACCCACCATTTGTTATTTCATTGCCCAAAACTAAGTATCTTTCCTGGGGTGGGAGACTAGGGATAAGGGCCTAGATGAGCTGTGTTATTTCCTCCAACAATGAGAACAAACCTGTTCAAAAGCAGTAGTGGGGGTGGGGGGCAAAGGACACGTTGAACAATGAACAGATTACTGAGACCAAGGACTAAAGCTAAATGCTGTAATGGTTTCTTTGACATTAAAACAACGCAGTATGTGAGCACCATGTCTTGTGAGCGTCAGAGGCTCCTGCTCAGGCAGACTTGGGGTTGAAGCCCACCTTCTTCTTTCCTCTTAGGGGGGCAGATGGGGCCTTGGGCACCTTACCCTGTTCAGTATGCATCACCCGGGGCAGCACCCGCTCACGCAGGGTCTGGAAGTCCAGAGGCTGCTCGCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU724843 lncRNA downstream 6754 66205127 ~ 66205365 (-) True G637692
TU724841 lncRNA downstream 11745 66199847 ~ 66200374 (-) True G637690
TU724830 lncRNA downstream 22809 66189103 ~ 66189310 (-) True G637679
TU724821 lncRNA downstream 33878 66178040 ~ 66178241 (-) True G637670
TU724817 lncRNA downstream 34224 66175960 ~ 66177895 (-) False G637669
TU724810 lncRNA upstream 10111 66223587 ~ 66232423 (-) True LOC110528298
TU724876 lncRNA upstream 65557 66279033 ~ 66279290 (-) True G637724
TU724981 lncRNA upstream 207537 66421013 ~ 66432198 (-) True G637817
TU725059 lncRNA upstream 309037 66522513 ~ 66523052 (-) True G637893
TU725076 lncRNA upstream 324242 66537718 ~ 66537921 (-) True G637910
XM_021610243.2 mRNA downstream 7806 66140229 ~ 66204313 (-) True LOC110528295
XM_021610244.2 mRNA downstream 53446 66140229 ~ 66158673 (-) False LOC110528295
XR_005052738.1 mRNA downstream 81802 66130189 ~ 66130317 (-) True LOC118965412
XR_005052737.1 mRNA downstream 82316 66129661 ~ 66129803 (-) True LOC118965411
XR_005052739.1 mRNA downstream 83752 66128239 ~ 66128367 (-) True LOC118965413
LOC110529002 mRNA upstream 385 66213861 ~ 66216016 (-) True LOC110529002
XM_036983880.1 mRNA upstream 10116 66223592 ~ 66274896 (-) False LOC110528298
XM_021610246.2 mRNA upstream 10116 66223592 ~ 66275633 (-) False LOC110528298
XM_036983879.1 mRNA upstream 10116 66223592 ~ 66275633 (-) False LOC110528298
XM_021611154.2 mRNA upstream 79810 66293286 ~ 66297208 (-) True LOC110529003
TU724820 other downstream 34224 66175960 ~ 66177895 (-) True G637669
TU724622 other downstream 319717 65886936 ~ 65892402 (-) True G637504
TU724613 other downstream 329563 65881012 ~ 65882556 (-) True G637495
TU723769 other downstream 716962 65493790 ~ 65495157 (-) True G636719
TU723574 other downstream 975238 65234484 ~ 65236881 (-) True G636571
TU724874 other upstream 63306 66276782 ~ 66277080 (-) True G637722
TU726292 other upstream 842178 67055654 ~ 67079059 (-) True LOC110528300
TU726459 other upstream 1033156 67246632 ~ 67275540 (-) True LOC110528308
TU726566 other upstream 1201380 67414856 ~ 67416090 (-) True G639226
TU728872 other upstream 2581118 68794594 ~ 68809149 (-) True G641364

Expression Profile