RNA id: TU734363


Basic Information

Item Value
RNA id TU734363
length 556
RNA type TUCP
GC content 0.45
exon number 1
gene id G646073
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 73810902 ~ 73811457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatcgggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaaatttgccacaagccacttgggagacacaccaaacatgtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctcatcaccctgaacacaccatgcccactgtcaaacatggtggtggcagcatcatgatttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagccaaatacaggaccattctggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU734358 lncRNA downstream 4460 73806228 ~ 73806442 (-) True G646068
TU734357 lncRNA downstream 4747 73805739 ~ 73806155 (-) True G646067
TU734353 lncRNA downstream 6835 73803838 ~ 73804067 (-) True G646063
TU734307 lncRNA downstream 71702 73738220 ~ 73739200 (-) True G646017
TU734252 lncRNA downstream 86899 73723594 ~ 73724003 (-) True G645973
TU734368 lncRNA upstream 5620 73817077 ~ 73817326 (-) True G646078
TU734372 lncRNA upstream 7520 73818977 ~ 73819333 (-) True G646082
TU734379 lncRNA upstream 11413 73822870 ~ 73823277 (-) True G646089
TU734544 lncRNA upstream 119481 73930938 ~ 73931146 (-) True G646247
TU734553 lncRNA upstream 121887 73933344 ~ 73933894 (-) True G646253
XM_021610563.2 mRNA downstream 31419 73739527 ~ 73779483 (-) True LOC110528472
XM_021610559.2 mRNA downstream 154493 73643254 ~ 73656409 (-) False LOC110528468
XM_021610557.2 mRNA downstream 180602 73623393 ~ 73630300 (-) True LOC110528466
XM_021610558.2 mRNA downstream 190380 73617592 ~ 73620522 (-) False LOC110528467
XR_005052721.1 mRNA downstream 235299 73567784 ~ 73575603 (-) True LOC110527146
XM_021610566.2 mRNA upstream 123932 73935389 ~ 73938185 (-) True LOC110528474
XM_036984454.1 mRNA upstream 341937 74153394 ~ 74153828 (-) True LOC118965364
XM_036984456.1 mRNA upstream 354945 74166402 ~ 74189092 (-) True LOC118965365
XM_021610568.2 mRNA upstream 401058 74212515 ~ 74601103 (-) False LOC110528476
XM_036984053.1 mRNA upstream 412589 74224046 ~ 74601110 (-) False LOC110528476
TU734207 other downstream 115977 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 600478 73207960 ~ 73210424 (-) True gnrh2
TU733350 other downstream 1092453 72717746 ~ 72718449 (-) True G645156
TU733319 other downstream 1107180 72700709 ~ 72703722 (-) True G645145
TU732840 other downstream 1744779 72044221 ~ 72066123 (-) False G644738
TU736097 other upstream 1295440 75106897 ~ 75107916 (-) True LOC110528488
TU737600 other upstream 1807868 75619325 ~ 75620937 (-) False G649025
TU737941 other upstream 2403244 76214701 ~ 76220931 (-) False G649327
TU737942 other upstream 2403244 76214701 ~ 76215513 (-) True G649327
TU738321 other upstream 3201971 77013428 ~ 77016601 (-) False G649684

Expression Profile