RNA id: TU734553


Basic Information

Item Value
RNA id TU734553
length 551
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G646253
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 73933344 ~ 73933894 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGAAATCGGAAACCATTcaaggtagactcagcgaaatGACGTAATCACGAGCAGATATTGACATGAGTGAGATGCAGGACTTCGCTCTCACAcagtatctgcgcatgtgcaTATGCTCACCTTCGCGCTGCAAGGTAGAAGGCACCAAAATAGCAGAGAAATTGAGCCTTGTAGTAATTTCGTTTACTAGcggggagatgcgcctggctcgcggctaactggtgctcgcttcggggcaggggcgttagccactatagccacttgGTAGCAGCGATGATCCGATACATAGGTCCAGAGTTtacggcaaggatccggtggagtggTGGATTCTAGCCGTGTTGGGGTAGAGTCCGGAAGGCATCGGCTGAGTAGCCGGGTGATCAcagagtaggccgggaggtgggcctggcTCAGGGCTAGCTTCGGGGGTGGGTCACAcggtggcagctagctagctgtgatgatcaggagtaatggtccagggtttacggcaggaatccggcgttgtagtggagaaaaCAGTCTGATGCTGGCAAGTGTTATCCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU734544 lncRNA downstream 2198 73930938 ~ 73931146 (-) True G646247
TU734379 lncRNA downstream 110067 73822870 ~ 73823277 (-) True G646089
TU734372 lncRNA downstream 114011 73818977 ~ 73819333 (-) True G646082
TU734368 lncRNA downstream 116018 73817077 ~ 73817326 (-) True G646078
TU734358 lncRNA downstream 126902 73806228 ~ 73806442 (-) True G646068
TU734575 lncRNA upstream 14710 73948604 ~ 73948991 (-) True G646274
TU734582 lncRNA upstream 19958 73953852 ~ 73954091 (-) True G646281
TU734587 lncRNA upstream 21545 73955439 ~ 73956118 (-) True G646286
TU734619 lncRNA upstream 40582 73974476 ~ 73974719 (-) True G646318
TU734643 lncRNA upstream 57501 73991395 ~ 73991639 (-) True G646342
XM_021610563.2 mRNA downstream 153861 73739527 ~ 73779483 (-) True LOC110528472
XM_021610559.2 mRNA downstream 276935 73643254 ~ 73656409 (-) False LOC110528468
XM_021610557.2 mRNA downstream 303044 73623393 ~ 73630300 (-) True LOC110528466
XM_021610558.2 mRNA downstream 312822 73617592 ~ 73620522 (-) False LOC110528467
XR_005052721.1 mRNA downstream 357741 73567784 ~ 73575603 (-) True LOC110527146
XM_021610566.2 mRNA upstream 1495 73935389 ~ 73938185 (-) True LOC110528474
XM_036984454.1 mRNA upstream 219500 74153394 ~ 74153828 (-) True LOC118965364
XM_036984456.1 mRNA upstream 232508 74166402 ~ 74189092 (-) True LOC118965365
XM_021610568.2 mRNA upstream 278621 74212515 ~ 74601103 (-) False LOC110528476
XM_036984053.1 mRNA upstream 290152 74224046 ~ 74601110 (-) False LOC110528476
TU734363 other downstream 121887 73810902 ~ 73811457 (-) True G646073
TU734207 other downstream 238419 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 722920 73207960 ~ 73210424 (-) True gnrh2
TU733350 other downstream 1214895 72717746 ~ 72718449 (-) True G645156
TU733319 other downstream 1229622 72700709 ~ 72703722 (-) True G645145
TU736097 other upstream 1173003 75106897 ~ 75107916 (-) True LOC110528488
TU737600 other upstream 1685431 75619325 ~ 75620937 (-) False G649025
TU737941 other upstream 2280807 76214701 ~ 76220931 (-) False G649327
TU737942 other upstream 2280807 76214701 ~ 76215513 (-) True G649327
TU738321 other upstream 3079534 77013428 ~ 77016601 (-) False G649684

Expression Profile