RNA id: TU737612


Basic Information

Item Value
RNA id TU737612
length 223
lncRNA type intronic
GC content 0.59
exon number 2
gene id G649036
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 75592643 ~ 75593171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATCATACTACCTGGGAAGGCAGAGACGCATCCCACTGGGACTGGATACAGGGGGGACGGGTAGAGGTACcccagattgtgctggtcgaggcgctggagagactccctgtctctcccagcggtccatggtcTGGACAACACAATCCATCGTGGCGCCGAGATGTTGCAGCATCTTCGTGTGTTCTCGGACGAGTTCCTCGACTCGTCTAACCGGTGTGGGAT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU737542 lncRNA downstream 1370 75537161 ~ 75591273 (-) True G648972
TU737554 lncRNA downstream 52252 75488935 ~ 75540391 (-) False G648984
TU737556 lncRNA downstream 52390 75488935 ~ 75540253 (-) True G648984
TU737553 lncRNA downstream 108452 75483934 ~ 75484191 (-) True G648983
TU736587 lncRNA downstream 127874 75464450 ~ 75464769 (-) True G648114
TU737617 lncRNA upstream 7739 75600910 ~ 75601170 (-) True G649041
TU737599 lncRNA upstream 27369 75620540 ~ 75623983 (-) True G649025
TU737602 lncRNA upstream 32328 75625499 ~ 75629826 (-) True G649027
TU737632 lncRNA upstream 48739 75641910 ~ 75642242 (-) True G649056
TU737633 lncRNA upstream 49337 75642508 ~ 75643010 (-) True G649057
XM_036984066.1 mRNA downstream 50136 75530377 ~ 75542507 (-) False LOC110528491
XM_036984067.1 mRNA downstream 50136 75530377 ~ 75542507 (-) False LOC110528491
XM_036984068.1 mRNA downstream 50138 75535647 ~ 75542505 (-) True LOC110528491
XM_021610593.2 mRNA downstream 101261 75485309 ~ 75491382 (-) True LOC110528490
XM_021610592.2 mRNA downstream 101262 75485309 ~ 75491381 (-) False LOC110528490
trnaq-uug-2 mRNA upstream 114003 75707174 ~ 75707245 (-) True trnaq-uug-2
XM_021610603.2 mRNA upstream 453877 76047048 ~ 76060389 (-) True LOC110528500
XM_021610604.2 mRNA upstream 475904 76069075 ~ 76085739 (-) False LOC110528501
XM_021610605.2 mRNA upstream 503992 76097163 ~ 76167318 (-) True LOC110528502
XM_021610606.2 mRNA upstream 585382 76178553 ~ 76191798 (-) False LOC110528503
TU736097 other downstream 484727 75106897 ~ 75107916 (-) True LOC110528488
TU734363 other downstream 1781186 73810902 ~ 73811457 (-) True G646073
TU734207 other downstream 1897718 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 2382219 73207960 ~ 73210424 (-) True gnrh2
TU733350 other downstream 2874194 72717746 ~ 72718449 (-) True G645156
TU737600 other upstream 26154 75619325 ~ 75620937 (-) False G649025
TU737941 other upstream 621530 76214701 ~ 76220931 (-) False G649327
TU737942 other upstream 621530 76214701 ~ 76215513 (-) True G649327
TU738321 other upstream 1420257 77013428 ~ 77016601 (-) False G649684
TU738738 other upstream 1789496 77382667 ~ 77382936 (-) True LOC110529034

Expression Profile