RNA id: TU737640


Basic Information

Item Value
RNA id TU737640
length 944
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G649063
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 75655410 ~ 75657318 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accctttgccttgatgacagctttgcacactcttggcattctctcaaccagcttcatgaggaatgcttatccaacagtcttgagttcccacatatgctgggcacttgttggctgcttttccgtcaGTGTGCGgtccaactcttcccaaaccatctcaattgaggttgggtgattgtggaggctttgaattaaataaatacatcacagacagtgtcaccagcaaagcacccccataccacctactccatgcttcatggtgggaaccacacatgcggagatcatccattcacttaatctgcgtctcacaaggacacggcggttggaaccaaaaaatgtAAATTTGGACTCAGgccatttccaccggtctaatgtccatttgcTTGTGTTTCGCGTCAGAAGCAAGTCCCTTCttcctattggtgtcctttaggagtggtttccttgcagcaatacaaccatgaaggtctgattcacgcagtctcctctgaacagttgatgttgagatgtgtctgttacttgagctctgtgaagcatttatttgggctgataTTTCTGAGGaaagtccaTTTTATactaccttcatgtcttaaagtaatgatggactgtcgtttctctttggttatttgagttgttgttgccataatatggacttggtcttttaccaaatagggctatcttctgtataccacccctaccttgtcacaacacaactgattgtgtcagttgaatcagagaggtgcggggggctgccttaatcaacatccacgtcttcggcgcccggggaacagtgggttaaactgccttactcaggggcagaacgacactttttaccttgtcagcttagggattcgatccagaaacctttttggttactagcccaatgctaaccactaggctacctgctgcctcatTGAAGGTGGCGATTAGCAAAGAACTCCAGACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU737633 lncRNA downstream 12400 75642508 ~ 75643010 (-) True G649057
TU737632 lncRNA downstream 13168 75641910 ~ 75642242 (-) True G649056
TU737602 lncRNA downstream 25584 75625499 ~ 75629826 (-) True G649027
TU737599 lncRNA downstream 31427 75620540 ~ 75623983 (-) True G649025
TU737617 lncRNA downstream 54240 75600910 ~ 75601170 (-) True G649041
TU737644 lncRNA upstream 7567 75664054 ~ 75664284 (-) True G649067
TU737654 lncRNA upstream 48290 75704777 ~ 75706871 (-) True G649077
TU737670 lncRNA upstream 52195 75708682 ~ 75708883 (-) True G649093
TU737673 lncRNA upstream 54786 75711273 ~ 75711472 (-) True G649096
TU737689 lncRNA upstream 73594 75730081 ~ 75730562 (-) True G649111
XM_036984066.1 mRNA downstream 112903 75530377 ~ 75542507 (-) False LOC110528491
XM_036984067.1 mRNA downstream 112903 75530377 ~ 75542507 (-) False LOC110528491
XM_036984068.1 mRNA downstream 112905 75535647 ~ 75542505 (-) True LOC110528491
XM_021610593.2 mRNA downstream 164028 75485309 ~ 75491382 (-) True LOC110528490
XM_021610592.2 mRNA downstream 164029 75485309 ~ 75491381 (-) False LOC110528490
trnaq-uug-2 mRNA upstream 50687 75707174 ~ 75707245 (-) True trnaq-uug-2
XM_021610603.2 mRNA upstream 390561 76047048 ~ 76060389 (-) True LOC110528500
XM_021610604.2 mRNA upstream 412588 76069075 ~ 76085739 (-) False LOC110528501
XM_021610605.2 mRNA upstream 440676 76097163 ~ 76167318 (-) True LOC110528502
XM_021610606.2 mRNA upstream 522066 76178553 ~ 76191798 (-) False LOC110528503
TU737600 other downstream 34473 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 547494 75106897 ~ 75107916 (-) True LOC110528488
TU734363 other downstream 1843953 73810902 ~ 73811457 (-) True G646073
TU734207 other downstream 1960485 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 2444986 73207960 ~ 73210424 (-) True gnrh2
TU737941 other upstream 558214 76214701 ~ 76220931 (-) False G649327
TU737942 other upstream 558214 76214701 ~ 76215513 (-) True G649327
TU738321 other upstream 1356941 77013428 ~ 77016601 (-) False G649684
TU738738 other upstream 1726180 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 2372757 78029244 ~ 78029753 (-) True G650755

Expression Profile