RNA id: TU737938


Basic Information

Item Value
RNA id TU737938
length 1324
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G649325
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76208905 ~ 76225014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATGTTGACATTGTCTTTCAAGACTTTAATCAAAGTGATCTAGAACAACGGTGATACCAGTGAAGCAGTCATTTATTCATTTTGACCGGTGTCACTGCTCAACAGTAGGCAGAAAATAACTCTTAAATACTGTCCTCTACCAGATTggatacattttacatacacaacGCAGAGGCAAACAAAACAGCAAGATCAAACTGATACAAAAGAAGCATTTATTTCATTATCCACTGAAAACttttaaagtgtgtgtgcgtgtgtcaaaTATATACAATAAATCACTACAATTAATGTTTTATGTATTCAGTCATTGGAATTACTAACAGTGTTTTCTGAAGCAGGACAGAGATTTGAATGATGGTTCAGAGGTTCTTTCTTTTGACTTCTCCTACATGCACCTTTTTGGTTAACAGTTTGGTAGAAGTTGGAACTGGGAGTTGCCTTTAAATCTAAAGTCGACGATCCCGATGTGGAGAAACGGCAAGTTCGACACCATGAGAAATACTGATATTTAAAAAATCCATTGCCCCACATTAAACTTGATTTCAATTTTCCATTTCTGAGATATCGGACAATACACACTTCTGATGAGAAATAATGCCTGGAATGTTGATGGCTTGCCAGATAAGAAAATAAACACATCTTAGGACATAGTAGTTAACTTCCACCGAGTAAAAATGATCAGCCATTTCCACCACACTGGATCAGATAATTATTGTATCCATTCAGCTGTTAACATACTACAGGAGTCATTATACgcatgtgtgtgtagatgtgtgtgtgtgtgtgtgtgtgtttaagtttgGACGAAGGGTTCGGTTCACCCCTGGTGTCTTTGGACAGAGGGACATCAGTTCTAGCCCACCACAGTGATTGGGTTAAGGGCCAGCACGTCAAACAGCACTCACCCATCCCTAGAGAGGGGTGGTGCACCTCtgaggaagacacacacagggtGCATTGTGAAAGCAGCAGTGTAACCCCGCTATCTAGCAGGCTGTCCCTTAGATAGTTAATCACCTCATATGTCTTTTATGTCCACACTACAGGCCCTCTCAGAGCATTTATTGGCTCAATCTTTCAGACAGTATTATACTGACCCACTGTTTCCCCACCCTTATTTCTAAATGTGTGGTTTCATCCGTTCagacCTGAGAAGCGATTGGTCTTGGGTATAGAATTTGAGGGGGCCAGGTTGGCGCAGAGCTACGAGGTGAGAGATCTAAGATGGAGAACAGGACAGCCCGTTAAACAAGCAGGGTTTAACCTCAGCAGCCCGTCTGGGTGATGTCACCGCCTgagctcttggtcacctccatggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU737933 lncRNA downstream 45919 76177362 ~ 76177713 (-) True G649320
TU737931 lncRNA downstream 47451 76175962 ~ 76176181 (-) True G649318
TU737904 lncRNA downstream 95691 76126640 ~ 76127941 (-) True G649292
TU737820 lncRNA downstream 153349 76069079 ~ 76070283 (-) False LOC110528501
TU737952 lncRNA upstream 2731 76227745 ~ 76228052 (-) True G649337
TU738015 lncRNA upstream 105000 76330014 ~ 76330342 (-) True G649399
TU738016 lncRNA upstream 105781 76330795 ~ 76331027 (-) True G649400
TU738029 lncRNA upstream 124576 76349590 ~ 76349821 (-) True G649413
TU738037 lncRNA upstream 135022 76360036 ~ 76360270 (-) True G649421
XM_036984085.1 mRNA downstream 31481 76178553 ~ 76192151 (-) True LOC110528503
XM_021610606.2 mRNA downstream 31834 76178553 ~ 76191798 (-) False LOC110528503
XM_021610607.2 mRNA downstream 31834 76178553 ~ 76191798 (-) False LOC110528503
XM_021610605.2 mRNA downstream 56314 76097163 ~ 76167318 (-) True LOC110528502
XM_021610604.2 mRNA downstream 137893 76069075 ~ 76085739 (-) False LOC110528501
XM_036984086.1 mRNA upstream 42636 76267650 ~ 76279500 (-) True LOC110528506
XM_036984088.1 mRNA upstream 58235 76283249 ~ 76328054 (-) False LOC110528507
XM_036984087.1 mRNA upstream 58235 76283249 ~ 76328059 (-) True LOC110528507
XR_005052730.1 mRNA upstream 62120 76287134 ~ 76287188 (-) True LOC118965404
XM_021610615.2 mRNA upstream 189266 76414280 ~ 76428175 (-) False LOC110528509
TU737941 other downstream 2701 76214701 ~ 76220931 (-) False G649327
TU737942 other downstream 8119 76214701 ~ 76215513 (-) True G649327
TU737600 other downstream 602695 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 1115716 75106897 ~ 75107916 (-) True LOC110528488
TU734363 other downstream 2412175 73810902 ~ 73811457 (-) True G646073
TU738321 other upstream 788414 77013428 ~ 77016601 (-) False G649684
TU738738 other upstream 1157653 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 1804230 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 1818285 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 2051134 78276148 ~ 78312502 (-) True eya2

Expression Profile