RNA id: TU737941


Basic Information

Item Value
RNA id TU737941
length 1022
RNA type TUCP
GC content 0.53
exon number 5
gene id G649327
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76214701 ~ 76220931 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaaacaaatatttattgcGTGCACAAGCCCCCAGTGTTGCTGCACAAAAAGGGATAGCTATAATGTTAGGATTCTTATTTCTTTGTGCATGACCAAATATGAAACAAAACGGCAGAAATACTTCGACAACATCTACTGCAGCATTTATTTTGCTATAAAATCACAACTCACATTTGGCCATACTTGAATTTTTAGACTATTTTTATGAAATACTCCCATTGTAGAGTCCCGAGTGTGACCAACGTGGACGGTGAATTAGACATTCTTACTCACAAATGCCAAAATCTACACCATATTTGTCAGGGTGTTCATTTTTGGCCAGGTTACCACTAGGCTGGAAGTGGAGCGTGTGTTGCGTCAGTAGCTACCTCCAGGTTGTCTTGGCCGTACAGCTCCATAGCTTTCTCCTCAGACAGCCCACAGGCACCATACTCCAGAGGGGTGAACACCGTGGTGGGAACATTCACGTAGTCACACTTGAGCGAGGCACCCGCGTACAGACGGCGTGCCAGCAGCTTGCCAGCCTGGATAGCCACGGGCGTCAGCTCCCACTTGCCCTCCAGGATGTCTCCGATGGCGTAGATGTGCGGCACGTTGGTCTGCTCCTCGTCGTTCACCGGGATCTTACCATTCTTGGGGTTGACTTTGACCCCGGCTTGATCCAGGCCGATCTTTCCTGTACAGGCGTCGCGCCCCACGGCTATCAACACAGTGTTGTACTCTCCCTCGATGGTCTCGTCTCCCTCCGTGCTCTTGGCTGTCACCTTCAGCCTCCCAGGAGTACctgcctccagctcctccacCTTGACGGGGACGTACTTCCGGAGGAACTTTACGCCATGTTCCTCCATGTGCTTGCCGGCACGATTGGCCATTTCCTGGTCGAAGCCCCTCAGGAGGATGGAGCGTACCATGACTGTCACATCCAGGCCCAGGCCCGCCAGAAAACCCCCGCACTCCAGCGCCACGTAGGACGCCCCGATCACCAGGGTCTTGCCAGGGCAGTGGGGCAGAGAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU737933 lncRNA downstream 36988 76177362 ~ 76177713 (-) True G649320
TU737931 lncRNA downstream 38520 76175962 ~ 76176181 (-) True G649318
TU737904 lncRNA downstream 86760 76126640 ~ 76127941 (-) True G649292
TU737820 lncRNA downstream 144418 76069079 ~ 76070283 (-) False LOC110528501
TU737821 lncRNA downstream 144418 76069079 ~ 76070283 (-) True LOC110528501
TU737938 lncRNA upstream 2701 76223632 ~ 76225014 (-) True G649325
TU737952 lncRNA upstream 6814 76227745 ~ 76228052 (-) True G649337
TU738015 lncRNA upstream 109083 76330014 ~ 76330342 (-) True G649399
TU738016 lncRNA upstream 109864 76330795 ~ 76331027 (-) True G649400
TU738029 lncRNA upstream 128659 76349590 ~ 76349821 (-) True G649413
XM_036984085.1 mRNA downstream 22550 76178553 ~ 76192151 (-) True LOC110528503
XM_021610606.2 mRNA downstream 22903 76178553 ~ 76191798 (-) False LOC110528503
XM_021610607.2 mRNA downstream 22903 76178553 ~ 76191798 (-) False LOC110528503
XM_021610605.2 mRNA downstream 47383 76097163 ~ 76167318 (-) True LOC110528502
XM_021610604.2 mRNA downstream 128962 76069075 ~ 76085739 (-) False LOC110528501
XM_036984086.1 mRNA upstream 46719 76267650 ~ 76279500 (-) True LOC110528506
XM_036984088.1 mRNA upstream 62318 76283249 ~ 76328054 (-) False LOC110528507
XM_036984087.1 mRNA upstream 62318 76283249 ~ 76328059 (-) True LOC110528507
XR_005052730.1 mRNA upstream 66203 76287134 ~ 76287188 (-) True LOC118965404
XM_021610615.2 mRNA upstream 193349 76414280 ~ 76428175 (-) False LOC110528509
TU737600 other downstream 593764 75619325 ~ 75620937 (-) False G649025
TU736097 other downstream 1106785 75106897 ~ 75107916 (-) True LOC110528488
TU734363 other downstream 2403244 73810902 ~ 73811457 (-) True G646073
TU734207 other downstream 2519776 73694573 ~ 73694925 (-) True G645928
TU733633 other downstream 3004277 73207960 ~ 73210424 (-) True gnrh2
TU738321 other upstream 792497 77013428 ~ 77016601 (-) False G649684
TU738738 other upstream 1161736 77382667 ~ 77382936 (-) True LOC110529034
TU739558 other upstream 1808313 78029244 ~ 78029753 (-) True G650755
TU739566 other upstream 1822368 78043299 ~ 78046469 (-) True G650763
TU739830 other upstream 2055217 78276148 ~ 78312502 (-) True eya2

Expression Profile