RNA id: TU739797


Basic Information

Item Value
RNA id TU739797
length 2717
lncRNA type read_through
GC content 0.39
exon number 2
gene id G650967
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 78154798 ~ 78182681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAGTAATAATATACTACATAAATCATAAAAGCAGCATTTATTCTGTTGCATTTGAAGTGCCTGTATAATTAGATAACTGAATGTAATCTGTAGCCCCAATTCTAAGCAGAAGAATTTTGTGAGGAATGGGTTGGTGAAAGGAATATAATTGAGGCTCCCTCAAGCCAAATGCATACACCAATGGTTTGAAATCCTTGAGAGGGACGTGCATACTCGATGAGGGAGAAACGGAATTGGGCTTGTTCAATGACAGTATGGCTAAGAAAGGCAATTCACTTTTAAGAGAACTGTAGGTACATTTTGTATCATGCTAACCTACAAGTCATTGTAACAAACATTTAACAAGCAAACACTGTTCAAGGTCAAACTGATGATTCGTACCAAAAACAAAGGAAAGTAAAATGAGTAGTATATGAATAttcaaataaaaaatttaaaaacacCGGTTTTAGATcatggaaatatcacattaaaTCCTGCTTACTGCTTTGTTATTAAAAACAAAGTAGCACTATCTTATGAAAGAAACATTAAAGAACATTACAAAGAATCTAGTAATTACTGGAAAATATGCTATTCTATGAATCAAGTGCGTTAAGTGCATTGGGGGAAAAAAACTGTAGGTAGTGCATAGTTTtaagcaggggttcccaaactcgTTCCTGGGGGCCACATTTTGGTTTACACAGcggattcaaataaccaactcatggTCACGCTTTGATTACTTGAATCCGCTGTGTAGTGCccgggcaaaaaccaaaacatgcccCCAGGACCGAGCTTGGGAAAATCTGTTCTAAACTACAGTAGCATATAAAAACTGATACAATTCTAGATTGACAGGGAGAGCAAATCCGCTTCACACCTTTTCaggtattatttatttcacttacacTAGATCTAGGAGCACATAGTTTTTAATGAAAGccaacatttatttaaaaatatttaatttcttTAAAGGTTTATAATCACTAGCTCTTGATTTAACATGGCAGAGAACCAGGACCCGTATTCACAAATAGTGCTGATCTAGgcgatatacagtaccagtcaaaagtttgaacacacatactcattcaaggtttttttttattttttactattttctacactgtagaataatagtgaagacatcaaaactatgaaataacacatatggaatcatgtagtaaccaaaatccagatatttgatattcttcaaatagccaccctttgccttgatgacagcttggcacacacttggcattctctcaaccagcttcatgaggtagttagttacctggaatgcatttcaattaacaggtgtgccttgtaaaaagtgcatttgtggaatttctttcctttttaatgtgtttgagccaatcagttgtgttgtgacaaggtaggggtggtatacaggagatagccctatttggtaaaagaccaagtacatattatggcaagaacagctcaaataagcgaagagaaacgacagtccattataactttaagacatgaaggtcagtcaatccggaaaatgtcaagaactttgaaagtttcttcaagtgcagttgcaaaaaccatcatacgttatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagttacctctgctgcagaggataagttcattagagttaactgcacctcagaaattgcagccaaagtaaatgcttcacacatctcaacataactgttcagaggagattgcgtgaatcaggccttcatggtgaaattgctgcaaataaaccactactaaaggacaccaataagaagaagagacgtgcttaggccaagaaacattagactggtggaaatctgtcctttggtctggagtccaaatttgagatttttggttccaaccgcagtgtctttgtgagacaaagagtaggtgaatggatgatctccacgtgtggtttccaccgtgaagcatggaggtggtgtgatggtgctttgctggtgacacggtctgtgatttatttagaatttaaggcacacttaaccagcatggctaatgcagcattctgcagtgatacgccatcccatctggttttcgcTTATagcacaatgacccaacacacgtCCAGGCtgcataagggctatttgaccaagaaggagagtgatgaacgCTGCAtccgatgacctggcctccacatttacccgacctcaacccaattgagatggtttgggatgaattagaccgcagagtgaaggaaaagcagccaacaagtgctcagtatatgtggggactccttcaagactgttggaaaagcattccaggtgaagctgttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaatggtggctactttgaagaagctaaaatctaaaatatatgttttggttactacatgattccatatGCGACACTTCATCcaaactcctcctccacatttactggattggttgaagaGTGGTCTTCTGGTCttgaccagtatgtaggggatctagaTTCAGgccagtatgtaggggatctagtttcaggccAGTATGTAGGTGATCTAGTTTCAGGAGTTtattttacgcctgctacgttaggttggTTTTCTAGTGAATCCACCTCTGGAGACACCTCATAATGTTTGTACATGTGACACCAGTGTTACAGTAAAGCCAAAGAGTGTAGGAGCAGTTGCTAACTAACTGGAAGTCATTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU739605 lncRNA downstream 83158 78071330 ~ 78071640 (-) True G650797
TU739592 lncRNA downstream 94400 78060133 ~ 78060398 (-) True G650784
TU739589 lncRNA downstream 95147 78059443 ~ 78059651 (-) True G650781
TU739574 lncRNA downstream 104315 78050256 ~ 78050483 (-) True G650766
TU739570 lncRNA downstream 105366 78048371 ~ 78049432 (-) True G650765
TU739813 lncRNA upstream 2583 78185264 ~ 78185466 (-) True G650981
TU739760 lncRNA upstream 5567 78188248 ~ 78189145 (-) True G650932
TU739818 lncRNA upstream 7146 78189827 ~ 78191649 (-) False G650983
TU739820 lncRNA upstream 7146 78189827 ~ 78194543 (-) False G650983
TU739821 lncRNA upstream 7146 78189827 ~ 78192019 (-) True G650983
XM_036984133.1 mRNA downstream 24328 78075509 ~ 78130470 (-) True necab3
XM_036984132.1 mRNA downstream 24329 78075509 ~ 78130469 (-) False necab3
XM_021610658.2 mRNA downstream 206503 77874612 ~ 77948295 (-) True LOC110528541
XM_036984117.1 mRNA downstream 627435 77472703 ~ 77527363 (-) False LOC110528539
XM_036984119.1 mRNA downstream 627435 77472703 ~ 77527363 (-) False LOC110528539
XM_036984140.1 mRNA upstream 72910 78255591 ~ 78312601 (-) False eya2
XM_036984142.1 mRNA upstream 72910 78255591 ~ 78312601 (-) False eya2
XM_036984143.1 mRNA upstream 72910 78255591 ~ 78312601 (-) False eya2
XM_021610668.2 mRNA upstream 227884 78410565 ~ 78424121 (-) True gcnt7
XM_021608293.2 mRNA upstream 387028 78569709 ~ 78572807 (-) True LOC110527149
TU739566 other downstream 108329 78043299 ~ 78046469 (-) True G650763
TU739558 other downstream 125045 78029244 ~ 78029753 (-) True G650755
TU738738 other downstream 771862 77382667 ~ 77382936 (-) True LOC110529034
TU738321 other downstream 1138197 77013428 ~ 77016601 (-) False G649684
TU737942 other downstream 1939285 76214701 ~ 76215513 (-) True G649327
TU739830 other upstream 93467 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 1271394 79454075 ~ 79455388 (-) True G652578
TU742081 other upstream 1760520 79943201 ~ 79943728 (-) True G653015
TU742099 other upstream 1843279 80025960 ~ 80044704 (-) False rab22a
TU742383 other upstream 2163121 80345802 ~ 80347567 (-) True G653274

Expression Profile