RNA id: TU739821


Basic Information

Item Value
RNA id TU739821
length 782
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G650983
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 78189827 ~ 78194543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATatacactctatactctactgcatATACATTCTATACTCTACTGGatacactctatactctatactccacTGCATatacactctatactctactggaTATACACTCTATTATCTACTGAAAGTATACTCTACACTCTACTGCATACACACTCTATACTGAACTGAATATACACTCATTACTCTACtgcatatacactatatactctACTGCATATACACTCTATACAATACTGgatatactctatactctactggaTATACACTCTATACTTTACTGCCTATACACTCTATACTCGATACTCTACTGCATATACATTCTATACTCTACTGCATATACATTCTATACTCTATAGTCTATACTCCACTGCATATACACTCTATACTCCACTGCATACGCACTCTATACTCAACTGAATATACACTCATTACTCTACTGcatatacactatacactctaCTGCATATAAACTCTATACTCTACTACATATACACTCTATACAATACTGgatatactctatactctactggaTATACACTCTATACTTTACTGCCTATACACTCTATACTCGATACTCTACTGCATATACATTCTATACTCTACTGGATATACACTCTATTATCTACTGAAAGCAtactctacactctactgtatacaCACTCTATACTCAACTGAATatacactctatactctactggaTATACACTCTATAATCTACTGAAAGTATACTCTACACTCTACTGCATACACACTCTATACTCAATACTCAACTGAATATACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU739760 lncRNA downstream 682 78188248 ~ 78189145 (-) True G650932
TU739813 lncRNA downstream 4361 78185264 ~ 78185466 (-) True G650981
TU739808 lncRNA downstream 14634 78172560 ~ 78175193 (-) True G650977
TU739803 lncRNA downstream 20031 78158171 ~ 78169796 (-) True G650972
TU739824 lncRNA upstream 2537 78194556 ~ 78195320 (-) True G650986
TU739832 lncRNA upstream 17073 78209092 ~ 78262068 (-) False eya2
TU739828 lncRNA upstream 63572 78255591 ~ 78256855 (-) False eya2
TU739831 lncRNA upstream 73629 78265648 ~ 78265965 (-) False eya2
TU739875 lncRNA upstream 75948 78267967 ~ 78268198 (-) True G651024
XM_036984133.1 mRNA downstream 59357 78075509 ~ 78130470 (-) True necab3
XM_036984132.1 mRNA downstream 59358 78075509 ~ 78130469 (-) False necab3
XM_021610658.2 mRNA downstream 241532 77874612 ~ 77948295 (-) True LOC110528541
XM_036984117.1 mRNA downstream 662464 77472703 ~ 77527363 (-) False LOC110528539
XM_036984140.1 mRNA upstream 63572 78255591 ~ 78312601 (-) False eya2
XM_036984142.1 mRNA upstream 63572 78255591 ~ 78312601 (-) False eya2
XM_036984143.1 mRNA upstream 63572 78255591 ~ 78312601 (-) False eya2
XM_021610668.2 mRNA upstream 218546 78410565 ~ 78424121 (-) True gcnt7
XM_021608293.2 mRNA upstream 377690 78569709 ~ 78572807 (-) True LOC110527149
TU739566 other downstream 143358 78043299 ~ 78046469 (-) True G650763
TU739558 other downstream 160074 78029244 ~ 78029753 (-) True G650755
TU738738 other downstream 806891 77382667 ~ 77382936 (-) True LOC110529034
TU738321 other downstream 1173226 77013428 ~ 77016601 (-) False G649684
TU737942 other downstream 1974314 76214701 ~ 76215513 (-) True G649327
TU739830 other upstream 84129 78276148 ~ 78312502 (-) True eya2
TU741554 other upstream 1262056 79454075 ~ 79455388 (-) True G652578
TU742081 other upstream 1751182 79943201 ~ 79943728 (-) True G653015
TU742099 other upstream 1833941 80025960 ~ 80044704 (-) False rab22a
TU742383 other upstream 2153783 80345802 ~ 80347567 (-) True G653274

Expression Profile