RNA id: TU744851


Basic Information

Item Value
RNA id TU744851
length 4868
RNA type TUCP
GC content 0.42
exon number 16
gene id G655316
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81622403 ~ 81651265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGccatagaaataaaaaataaaatctttCAAATTGTATTTGAAAAATGTTTCTTCTTCATGGATTAAAAACATTTCCCCTTGTACATTCTTAAAAAAGGATGGGCTGGTATGTAATGACATGTAATGTACGAGGCAGGAGAGTTAAATAACtttaacattttgttttctaTCTGTAGGGATCAGTAGCCTGTCTGATTATAGACAGCTAATCTCAATGGAAATGGAGAATGcgatccaaatggcacAAGCAGAGACTTCTCCAATCTCCAGCGATGGGACTGGGTGTCAATATCTTCACTGTAATAATGTATTCTCATTTGGTTTTTCAGTAAGCTTCTTTGATACAACACCTGTAAGGTACCTAGCTCGCTAACTactagcatttttttttttttacaggtacCAAGCTAGCTAACAACTAGCGGTTTGTTAcaggtacctagctagctaacaactagCGGTTTGTTTcaggtatctagctagctaacaactagCGGTTTGTTTcaggtatctagctagctaacaactagCGGTTTGTTTcaggtatctagctagctaacaactagCGGTTCGTTTCTGTGCGACATAATACATCTTCTGTACAAACAAACAGCACTACGGTAGATAAGACAGGCTTATGTTTGGCGGCAGCATCATTTCAGAATGTCACCTATACCTCACAGGCCAATTCCGACTACCAAATCAGATTTGAGATAGTCATTATAAAATGGCAGGATAACTTTTCATTGCAACTCCAGATATTTTAAAACGTGTAATATTTTTGATAAAAATGAATCAAATTCTGTGTGTTATGACAGAAAGCGATACTACTGCATTGAACGTTGTTTCTTTGTTGATATTATGGCATAAGATTTTGTGGTAGGTTTTCATTGGCCCCTGAAATTGTCGTAATTTTGTCTCTTGCATTGTTTAAGcaagttttttatatttttatttctctctACAAAGTTAAAAGTACCACCTATTTGAAAAACAGAGTTATAAAATACTTATCTTTCTACGAAGTATTGCACATTACAAATTGCAGTTTTGTTGATTAACAGTGTTGTTAAATGACGATTCATCCTCAGGAAGTATTAGTAACTGGAGACGGGGTGGTCATTTTACATTTTGAATTACAAAAAGGCAAAAACGTGATTGAAAAACAATCAAAGTACAATAAACTAAACGTTCTGAATTTATACCCCccaggggggaaaaaaaagaagATTTTTCAAATGTTTATGGAATAGAATCAATAGAATTAAGCGAAGCTTCCGTTTCACAACATGGGGTTTCACATTTCAACATTCCATTCTAAGAATATCTTTGCATTGTTTTATCATAAACTCTTCAAATTCCAACAAGGCTTTTGTTTGAATTGTTTCTGCCTCTTTGAAAAGCTGTACTAATATAATATTTAAAACTAAACTAAGATATGACGACCGATAGACAGGGAGTGTGAAAAGGCTGGAGGAAGTGGATAGTATAAGTTAGTATATTAATCAAATTACCATATGTATTATCATCACATCAGAACGTACACTGACCTAGCCAGCAGAAATTCAATAGAAAGATCTGATCGATGTGATTGAGAAGCAGTCTGCTTGTATTTTGAATGGTTCCTTAATCAATATTTGCGATTTATGATCCATATTTACTGTATGGGGAGTTTACATTAATGCGTAAAGTTATTGTGGCAGGTCCTTTATGCTCCTGTCAATCCATTAGAGAGACAGACTCAAGAGATGCTTTATGCATTATATAGTGTGATGTTGTGCTTGGTATTAACTTGCCACTATGTCATGTCCTCTATCTATAGCCAGCGATACAACAACAGACTAAAACACTAAGAATAAAGGAAAAAAACTCACTTCGTTACTTAGTGCAGATAATTAAATCACAGACTTGAAAGACGTATGATGTAGCTACTGTATGCACTGGGATGGATGGCATGTAGCAGTAGTGTCCTTCACCAGCATAGTATAGTCTACTTTAACATGGAGTTGGGCTGCCTGTATGTATGTACACTAGACACTGTACAAGGAGGACAGGTTTGTACCTCCACAGTCAGGGCCAGGTACAGTTGCCAGCACTAAAAAGCTAGGTTGTACTGCAGTGTTATTTATACAGACAGAACAATTACTGCAAGGTGCTCAAGTACCTTCTAGCAAATAGGTGTGTCAAAAACCAGTATTGCAGACTGGGGCAGGATTTTAAAACCCTAACTTTTTAGCAACTGTAGATGAGAAGCTCTGGACCATGAACGCTGCCTAGTAGTGGAGGCACGTTCAGGTTCAGTTGTAATTTTACAACAAACATCGACGACGAACAACACTCGACTAATCTCACTGTATACAAAGCGGGGGGCACCACCTCCACGATATTATCGTACTATAGACATTAGTTAAGCTGAGAAGAGAGAGGGGCTAGGTTGATCTAGATACAAACAGGAGATACAAACAGGACATAGTCCAATGTTACTGCTCAAAAACATGACACACATTTAGTTCTTACGGTTTTATACGCCCCTTTTTTCTATTATGTATTTTcttctctgtaaaaaaaaaaagaagaagaagaagaaaagattCCTAAAATAGAGACGACCGCTTATAGTTCTAcgggaaagaagaagaagaagaagaagaagaagaagtacaAATGGACCATGTACTGATTCTGCTTGCTCCAAGTGGCATGGAAATCTACATTTCCTTCTAACTACATGAATCGTAATAACAGTAATATTAATAACAAtagtttaataaaaaaatattaaaaacataAGACAGGAAACCAATAATGTAACTTCCTCtgtagaaaacaaaaacaagaagaAGACTCCTAGTGCAGATACATAGCAATGTAAACCTGGTCCTATAACTAGTTTAgtgataatatagtataataacaTAGAAAGCGGGTcatttctttttttctctttttttttttctttttttaaaattcGTTCCTCTCACAGAGAGCGCTCACATCATAGTTTCTACAATAGTGTGGGTGGGCTTGATCAGGCCGTTGTTCCCGTTAGGGTCCAGGGGGTAGGCCAGCTCGGCGGACATGCCCTTGGGACGGTGGTCGACTGGACGGGAGCTAGCACCTCCCAGCGGAGCTGCCACAGCCTTGATCCTCTCTATGAGTGGTCCATCGGACTGGATGATCTTGATGACCACCACCATAGGAATACAGATCATAGAAGCCAGGGCCAGAGTCCAGCCCACGCCGATGGACCAGTCGGGGTACTCGTAGACCTTGTTGTACGTCAAAGGTTtgtatttgaccaaggagaagaCAAAGCAACCCACACAAAGAAGAGGTGTGATAAAAGACCAGCTCCATTTCATCCAGGCATTTGGTCTGTAGCCAATCATGTCTTCAATCGCATCATAGAAATTATCAACGCCATAAACCCAGGCTACAGCAATACATTCAAAGAATGCAACCCACAAAAGGCACACACCGCTGGCTGCATAGTAGTCAAAGAGCTGAAATACATACATGCCAccCCTAGTAACCATGGTAAGTCCCAGAAGATAGCTTATGGAGCACACTGTAGCTATAAAAAGTTCCCGACGGTAACCCTTCCTTAGGAAGGAGGGATACAGATCCACCAAGGAGGTGATCTGTCCTTCCACTTCCACAAACTGACTGTCGAGACCCAGTAGCAGAAGCATGATGAAGAAGAGAATAGCCCAGAAGGTTGGCAGCGGCATCATAGACACAGCTTTAGGATAGGCAATGAAGGCCAAGCCAggacCTGACTCTGCCACATCGGCAATGTCCACCCCTTGCTCTTGTGCCATGAAGCCCAGGACGGAAAATATTGCGAAGCCAGACACAAAACTGGTACCGCTGTTGAGGCCTCCCAGCAGCAAACAGTCCCTATAGcagttgtatttgtatttgttgtaGCTCCCCAGTGACGTCATAGCTCCCAGACAGATGGCATAGGAGAAGAAGATCTGAGTGCCTGCATCGATCCAAACCTCGGGGTCTTTGAGACGTTGCAGGTCTGGGTACAGGTAGAACTTGATTCCTTCAGATGCTCCTGGCAGAGTGACGCCGCGGATCAACAGAATGATCAGCATGACGAAGGGGAAGGTAGCAGTGACGTACACAACCTTCCCAGTGGATTTGACTCCTTTCCAGATACAGAAGAAACAGATGACCCAGACCCCCAGCAGACACAGAGCCAGGTCCCACTTGACCTCCCCGATTTCATCGATGCCACTGGAGATGCTAAGGACGTTACGTTCCCAGAACTCGGTGACGGGCGAGGTGAAGTTGGTGATGTTAGCGGCCAGCATCAGGGTCTTGTTCTTACGGACGGTGTCCTCCACACAGCGGTCTGTGTTCCAGGAGTTCTTACACTTGGCCCAGGGCAGCTCCGGCTGGAAGCACTGGAACAGGTAGTACAAACCCCAGGCCAGAATCACTATGTAGTAGATGTTCAGGAGGGACACGATCACAATCGAAGCGTAGCCGATACCAGTAAAGATGGGGCAAAGTTTTTCCCAGCAGGTGATTCCACCCTCGGAGGTGTACTGTCCGAGGGCCACCTCCAGGAAAAACACAGGAAGACCTCCGCCAAAGAGGAAGATGAAGTACGGGATGAGAAATGcacCTCCGCCATTCTTATAGCAGAGGTATGGGAAACGCCAGACGTTCCCTAAACCCACGAAGCCCCCAGCGACGGACAGGATAAAGTCAAGCTTGGAGTTCCACTTCTCCCTCTGAACGGGCTTCCCCTCTGCCTCGTCCTCGGGCCGGGTACCCGGGCTCTTCCCTGGGGAAGGCTTCAGCGTGTCCTTATGGAAGTCCTTCAGACACTGGAGCTTCTCTTTCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU744847 lncRNA downstream 47051 81574925 ~ 81575352 (-) True G655314
TU744846 lncRNA downstream 49031 81573018 ~ 81573372 (-) True G655313
TU744844 lncRNA downstream 55697 81566466 ~ 81566706 (-) True G655311
TU744841 lncRNA downstream 61402 81560775 ~ 81561001 (-) True G655308
TU744816 lncRNA downstream 66408 81510828 ~ 81555995 (-) True G655284
TU744957 lncRNA upstream 111408 81762673 ~ 81808717 (-) False G655392
TU744968 lncRNA upstream 120645 81771910 ~ 81777125 (-) True G655399
TU744971 lncRNA upstream 126192 81777457 ~ 81778172 (-) True G655401
TU744962 lncRNA upstream 143169 81794434 ~ 81805157 (-) True G655393
TU744958 lncRNA upstream 145840 81797105 ~ 81808717 (-) False G655392
XR_005052680.1 mRNA downstream 191803 81423132 ~ 81430600 (-) True LOC118965322
XM_021610731.2 mRNA downstream 269121 81351210 ~ 81353282 (-) False tma7
XM_036984201.1 mRNA downstream 309397 81301536 ~ 81313006 (-) True LOC110528600
XM_021610734.1 mRNA downstream 322660 81298907 ~ 81299743 (-) False LOC110528602
XM_036984187.1 mRNA downstream 898885 80656000 ~ 80723518 (-) False LOC110528585
XM_036984214.1 mRNA upstream 15421 81666686 ~ 81844047 (-) False LOC110528605
XM_036984215.1 mRNA upstream 15421 81666686 ~ 81844047 (-) False LOC110528605
XM_036984213.1 mRNA upstream 15421 81666686 ~ 81898007 (-) False LOC110528605
XM_036984211.1 mRNA upstream 15421 81666686 ~ 81992596 (-) False LOC110528605
XM_036984212.1 mRNA upstream 15421 81666686 ~ 81992596 (-) True LOC110528605
TU744829 other downstream 85305 81536557 ~ 81537098 (-) True G655297
TU744821 other downstream 105681 81515537 ~ 81516722 (-) True G655289
TU743208 other downstream 841712 80778760 ~ 80780691 (-) False G653977
TU743209 other downstream 841712 80778760 ~ 80780691 (-) False G653977
TU743122 other downstream 961375 80650590 ~ 80661028 (-) False LOC110528585
TU744948 other upstream 102290 81753555 ~ 81753966 (-) True G655387
TU745007 other upstream 181413 81832678 ~ 81833031 (-) True G655433
TU745026 other upstream 208106 81859371 ~ 81871057 (-) False G655447
TU745022 other upstream 211143 81862408 ~ 81871517 (-) True G655447
TU745049 other upstream 263443 81914708 ~ 81915510 (-) True G655469

Expression Profile