RNA id: TU744864


Basic Information

Item Value
RNA id TU744864
length 5736
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G655316
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81622403 ~ 81651265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGATGGAGACAGTATTCTATCTCGTGTTCCTCTTTAAACTGGGACACAGCCTGTCTAGGTCTAGATGTAATTTTAACGGTGTCCGGCGATATAATGCAACAATAAATTGAGACAGAACTGTGACGTCTCTATACAGCTTGGAGTGGTTGTGAATGTATTTCACTGACGGGGCCCTTTAGGGACATTTAAGGACCACAGCTCCtatacagacatacacagacagagcATTATATTCCAGAGTAGACGTACCATAAACCCAGGCTACAGCAATACATTCAAAGAATGCAACCCACAAAAGGCACACACCGCTGGCTGCATAGTAGTCAAAGAGCTGAAATACATACATGCCAccctgtgggagagagagacgggcaggATTTAGTGCTTGGATCATGTGTGAATGTAGGATTTAATGCATAgatttacaacaacaacaaaaagggttccaaaagggttcttcggctgtccccataggagaacccttctgTGTAAAGGGGTTCTCGCTGGAACCAAAACATGTTCTTCAAAAGGTTTCTCCTAtgtggacagctgaagaaccattTTAGGCTCTACATAGCACCtcatttttctaagagtgtagtggtGGGAGAATAACCATatgtatcccaaatagcaccctcttccctacatagtgcagtactttttaccatagccctatggggccctggtcaaaagtagtgcactttacataataaggaatagggtaccatttgtgaTGCAGACATGTTCCGACACAATAGCCCAACGGAACCTTGAGCCGTCCCGAGTTCCAACTCTGAACAGAGCACTCAGTCAGAGAGGCAACATGAGATTGTGATGTCATGGAAAAAGAACAGGCTACTGTGGTCGAGATTACATAAAGCAGTAAGTCCCTGACTCCCTGGCTGTCTAGGGGGCTTAGTGGGGTAGGATTAGGGAGTAGGGACTGTGGTGGGTTTGGTCTTTCTGAGGGTCATCCCATGCTCCTTTCTATATTATGAGGCTGAGAGGCAGGGACACAGCACAGTATCTCCAagtatagctagctagcaataccTTTTTACAGCTCATGATGCCCTGGATTGAGATGAGCTTCCCAGAAAGTGACTGACAGTTCAGTAGGGTTTCTCAGAGTGGAGATAAAAGAGAGTGAGGTGTATGTGTGAGCCAAATATTTCTCTAAATAGACCATACAGTAGGCTACTGGGAAGCTCAGGCCACACCAGAGTATTTGAAGTGGTGCTATTGTGAGGTACTGGCATGAGAAGATAGGAAAATAGAAAGGGGAACTGTATGTGTGGGACTCTTGTTTCTGGGGGAATTTGAGGTTTAAACGCTTCACAAGACCATTTTCTATTCAAGGGCAGTGGGAACCACTGCCATAAGGTGAAGCTACATTGtctacattgccttcagaaagtattcacaccccttgactgtttttccacattctgttgtatTACAacatgaatttaaaatggattacatttatatatttttttgtcactggtctacacacaataccccataatgtcaaactgGAATTATGTTCTTCAAAATGTGtactaattcattaaaaatgaacagatgaaatgtcttgagtcaataagtattcaaccactttcTTATGGCTAGCCTAaagaagttcaggagtaaaaaatgtgcttaacaagtcacataataagttacatgggctcactctgtgtgcaaattattgtgtttaacatgatttttaatgactacctcatgtctgtacccaacacatataattatctgtaaggtccctcagtcgagcagttaatttcaaacacagattcaacaacaaagaccagggaggttttccaacgccTCGCAAAGAACGATACCTGTTGGTAGAATGGAAAAAATAAAAAcgcaaacattgaatatccctttgagcatgttgaagttattaattacattttggatggtgtatcaatatacccagtcactacaatgatacaggcgtccttcctaacttagttgccagagcggaaggaaaccgctcagggatttcaccatgaggccaatggtgactttaaaacagttatagtTCATTGGCTGTGacatgagaaaactgaggatggatcaacaacattgtagttactccacaatactaaactaattgatattgtttgcaataaggcactaaagtaatactgcaaaatatgtggcaaagaaattaactttctgtttggggtaaatccaacacaacacatcactgagtaccattcttcatattttcaagcatagtgtggctacatcatgttatgggtatgattgtaatcattaaggactgggaagggatggtaccaggtttcctctagaagtgacgcttggcattcaggccaaagagttcaatcttggtttcatcagactgagagtatttaggtgccttttgtcaaactctaagcagctctgtcagagtgaccatcaggttcttggtcacttccctgaccaaggtccttctcccccgatcgctcagtttggctgggcggccagctctaggaagagtcttcgtggttccaaacttctttcatttaagaatgatgcaggccactgtgttcttggggaccttcaatgctgcagaaatattttgttacccttcctcagatctgtgcctcgacacaatcctgtctcggagctctacggataactCCTTCGaccgcatggcttggtttttgtactgtcaactgtgggacctttatatagacaggtgtgtgcctttccaaatcatgtccaatcaattgaatttactacaggtagactccaaacaagttgtagagacatctcaaggatgatcaatggaaacaggatgcacctctgctcaatttcaagtctcatagcaaagggtctgaatacttgtgtaaataagatatttctgttttttattttttagacatttgtaaaaatgtgaaaAAGCATGtgtcactttgttattatgggggttttgtgtgtagattgctgaggatttttttatttaatcaattttagaataaggctgtaacgtaacaaaatgtggaaaaagtcaaggggtctgaatactttacgaatgcactgtacatcataTTCATTAGGGTGTCGCTTAATTTTAGTAAGATAATGTTATATTCATTAGGGTGTCGATTCGTTTTAGTAAGATAATTTTATATTCATTAGGGTGTCGCTAAGGTTCGGGACTGGGCTGGACACTTGTGATACTGTATCTTACATAGGaaagtacatcaactagaacttATTTAAGTAACATTACGGTCATATGATATCAGTGTAAAAAGTTCAAGTTTACTCCCAGAAGATAGTACTTAACCTAGTAACCATGGTAACTCCCAGAAGATAGTACTTAACCTAGTAACCATGGTAAGTCCCAGAAGATAGTACTTAACCTAGTAACCATGGTAAGTCCCAGAAGATAGTACTTACCCTAGTAACCATGGTAAGTCCCAGAAGATAGTACTTACCCTAGTAACCATGGTAAGTCCCAGAAGATAGTACTTACCCTAGTAACCATGGTAAGTCCCAGAAGATAGCTTATGGAGCACACTGTAGCTATAAAAAGTTCCCGACGGTAACCCTTCCTTAGGAAGGAGGGATACAGATCCACCAAGGAGGTGATCTGTCCTTCCACTTCCACAAACTGGggacagaaaaacacagagacaAGAGATGGGAGTAGTGATGCATACAGTAGGCCAGATAGGCTAACATTGTTGTACGGACgtagtcctgtgtggctcagtccgTAAAACATGTCTCTTGCAACGACAAGGgccgtgggtttgattcccgccgGGGTAACGCATATGTAAAATGGATGCGCACATGACTACGTCACTtgggataaaagcatctgctaaatgacatataTAGAGGCTATTATCAAGAGTGACTGTCAGCCAGTCAACCAATCAGCCAGAAAGTCAAccaatcagccagccagtcaacatATCAaccaatcagccagccagccagccagtaaaATTATACCATCGCATGTGCGATCTAGTCTCATATTACTTCCAATCCTTGTTTTCTCACTTGCTTGTAAGTGAGAAAGCCTGGAAATGGAGATTCTGTATCTAGCTAGGTCGTAGTAATGGTATGACTGTCTGTGGATGCTAGCATTTAGCTGTAGTAATGGTACGACTGCCTATGGATGCTAGCATTTAGCTGTAGTAATGGTACGACTGTCTAGCATTGAGCTGTAGTAATGATACGACTGTCTGTGGATGCTAGCATTTAGCTGTAGTAATGGTACGACTGTCTATGGATGCTCGCATTTAGCTGTAGTCATGGTACGACTGTCTATGGATGCTAGCATTTAGCTGTAGTAATGGTACGACTGTCTATGGATGCTAGCATTTAGCTGTAGTAATGGTACGACTGTCTATGGATGCTAGCATTTAGCTGTAGTCATGGTATGACTGTCTATGGATGCTAGCATTTAGCTGTAGTAATGGTACGACTGTCTATGGATGCTAGCATTTAGCTGTAGTAATGGTACAACTGTCTATGGATGCTAGCATTTAGCTGTAGTAATGGTACGACTGTCTATGGATGCTAGCATTTAGCTGTAGTAATGGTACGACTGTCTATGGATGCTAGCATTTAGCTGTAGTAATGGTATGACTGTCTATGGATGCTAGCATTTAGCTGTAGTAATGGTATGACTGTCTATGGATGCTAGCATTTAGCTGTAGTAATGGTATGACTGTCTGTGGATGCTAGCATTGAGCTGTAGTAATGGTACGACTGTCTATGGATGCTAGCATTGAGCTGTAGTAATGGTACGACTGTCTGTGGATGCTAGCATTTAGCTGtattgactaactgactgactgcgTCAACATGTAGTTGTTTTTTCATAAGCAGTTAACATCCAGCATTAGAACCTGGGGTGATGTGTCCGTGTCGTGGCTTGCCTCTGTGGATTGACTGATTTTATTGACTggctgtttagtcctgtttaggcCTGTATTGATCACATGTGTATGGGGGCAGGAGTTTTTCCTCCTGatcacatgtatatatatatgggcCACAAGTTTTTTCCCTGGCCATGTGACCACGAATTTCCCCACGCAGGTTAATAAAGCTGACCATGTGACATTCAGGAACTTGCTTAGTTACAACTTCCCTATTTTAAGATACTGACTGTGGCCACGTTCTAATGCCACTGGACATCGAAAATTGGAACAGAACCACCTCTGTCTCTTAACACGCTTACAACTTCCCTGTACAACTTACCCTACAAAGTGTATATTTTTCACCATCTCAGCAATCTTATCacacatataaaaaaaaaaacggacgTACTGTCTCATAATAAAAACATACAACTTTCATTAACAAGCCAATAAAATGTGTATCATTTCATAATCTTAGTGCTCATATATGACTGATATCAGTAAACTTCATTGCCACTGCGTTATAACGACCTGACCTGACTTTCTCTTTATTCATGATGGCGATACCACTGACCTATCCCGACGTAGCTGTCGGAAAAGAAACGTCTGAACGGGGTCGTCAGAAACCCAGAAACATCCGCTTTTCAgggcttctcctcttcctctatgctTTTCCCATAAAACCGTATGCTTCCGGTTTCCTTACGTCCCCGCTGAAGGTGCAACTGACGTGactgtatacagtatactacTGACTGTCTCAGATTCAGATCCTTGATTTATAATGAGTATACTACTGACTGTCTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU744847 lncRNA downstream 63193 81574925 ~ 81575352 (-) True G655314
TU744846 lncRNA downstream 65173 81573018 ~ 81573372 (-) True G655313
TU744844 lncRNA downstream 71839 81566466 ~ 81566706 (-) True G655311
TU744841 lncRNA downstream 77544 81560775 ~ 81561001 (-) True G655308
TU744816 lncRNA downstream 82550 81510828 ~ 81555995 (-) True G655284
TU744896 lncRNA upstream 1280 81645658 ~ 81646391 (-) True G655343
TU744849 lncRNA upstream 3473 81647851 ~ 81651265 (-) False G655316
TU744850 lncRNA upstream 3473 81647851 ~ 81651265 (-) False G655316
TU744855 lncRNA upstream 3473 81647851 ~ 81651265 (-) False G655316
TU744856 lncRNA upstream 3473 81647851 ~ 81651265 (-) False G655316
XR_005052680.1 mRNA downstream 207945 81423132 ~ 81430600 (-) True LOC118965322
XM_021610731.2 mRNA downstream 285263 81351210 ~ 81353282 (-) False tma7
XM_036984201.1 mRNA downstream 325539 81301536 ~ 81313006 (-) True LOC110528600
XM_021610734.1 mRNA downstream 338802 81298907 ~ 81299743 (-) False LOC110528602
XM_036984187.1 mRNA downstream 915027 80656000 ~ 80723518 (-) False LOC110528585
XM_036984214.1 mRNA upstream 22308 81666686 ~ 81844047 (-) False LOC110528605
XM_036984215.1 mRNA upstream 22308 81666686 ~ 81844047 (-) False LOC110528605
XM_036984213.1 mRNA upstream 22308 81666686 ~ 81898007 (-) False LOC110528605
XM_036984211.1 mRNA upstream 22308 81666686 ~ 81992596 (-) False LOC110528605
XM_036984212.1 mRNA upstream 22308 81666686 ~ 81992596 (-) True LOC110528605
TU744829 other downstream 101447 81536557 ~ 81537098 (-) True G655297
TU744821 other downstream 121823 81515537 ~ 81516722 (-) True G655289
TU743208 other downstream 857854 80778760 ~ 80780691 (-) False G653977
TU743209 other downstream 857854 80778760 ~ 80780691 (-) False G653977
TU743122 other downstream 977517 80650590 ~ 80661028 (-) False LOC110528585
TU744948 other upstream 109177 81753555 ~ 81753966 (-) True G655387
TU745007 other upstream 188300 81832678 ~ 81833031 (-) True G655433
TU745026 other upstream 214993 81859371 ~ 81871057 (-) False G655447
TU745022 other upstream 218030 81862408 ~ 81871517 (-) True G655447
TU745049 other upstream 270330 81914708 ~ 81915510 (-) True G655469

Expression Profile