RNA id: TU744865


Basic Information

Item Value
RNA id TU744865
length 3379
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G655316
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81622403 ~ 81651265 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGccatagaaataaaaaataaaatctttCAAATTGTATTTGAAAAATGTTTCTTCTTCATGGATTAAAAACATTTCCCCTTGTACATTCTTAAAAAAGGATGGGCTGGTATGTAATGACATGTAATGTACGAGGCAGGAGAGTTAAATAACtttaacattttgttttctaTCTGTAGGGATCAGTAGCCTGTCTGATTATAGACAGCTAATCTCAATGGAAATGGAGAATGcgatccaaatggcaccctattccctatatagcgcactacttttgaccagagacctatgtcAAAAttagttcactatgtagggaatagggtgccattttaggaCACAAGCAGAGACTTCTCCAATCTCCAGCGATGGGACTGGGTGTCAATATCTTCACTGTAATAATGTATTCTCATTTGGTTTTTCAGTAAGCTTCTTTGATACAACACCTGTAAGGTACCTAGCTCGCTAACTactagcatttttttttttttacaggtacCAAGCTAGCTAACAACTAGCGGTTTGTTAcaggtacctagctagctaacaactagCGGTTTGTTTcaggtatctagctagctaacaactagCGGTTTGTTTcaggtatctagctagctaacaactagCGGTTTGTTAcaggtacctagctagctaacaactagCGGTTTGTTTcaggtatctagctagctaacaactagCGGTTTGTTTcaggtatctagctagctaacaactagCGGTTCGTTTCTGTGCGACATAATACATCTTCTGTACAAACAAACAGCACTACGGTAGATAAGACAGGCTTATGTTTGGCGGCAGCATCATTTCAGAATGTCACCTATACCTCACAGGCCAATTCCGACTACCAAATCAGATTTGAGATAGTCATTATAAAATGGCAGGATAACTTTTCATTGCAACTCCAGATATTTTAAAACGTGTAATATTTTTGATAAAAATGAATCAAATTCTGTGTGTTATGACAGAAAGCGATACTACTGCATTGAACGTTGTTTCTTTGTTGATATTATGGCATAAGATTTTGTGGTAGGTTTTCATTGGCCCCTGAAATTGTCGTAATTTTGTCTCTTGCATTGTTTAAGcaagttttttatatttttatttctctctACAAAGTTAAAAGTACCACCTATTTGAAAAACAGAGTTATAAAATACTTATCTTTCTACGAAGTATTGCACATTACAAATTGCAGTTTTGTTGATTAACAGTGTTGTTAAATGACGATTCATCCTCAGGAAGTATTAGTAACTGGAGACGGGGTGGTCATTTTACATTTTGAATTACAAAAAGGCAAAAACGTGATTGAAAAACAATCAAAGTACAATAAACTAAACGTTCTGAATTTATACCCCccaggggggaaaaaaaagaagATTTTTCAAATGTTTATGGAATAGAATCAATAGAATTAAGCGAAGCTTCCGTTTCACAACATGGGGTTTCACATTTCAACATTCCATTCTAAGAATATCTTTGCATTGTTTTATCATAAACTCTTCAAATTCCAACAAGGCTTTTGTTTGAATTGTTTCTGCCTCTTTGAAAAGCTGTACTAATATAATATTTAAAACTAAACTAAGATATGACGACCGATAGACAGGGAGTGTGAAAAGGCTGGAGGAAGTGGATAGTATAAGTTAGTATATTAATCAAATTACCATATGTATTATCATCACATCAGAACGTACACTGACCTAGCCAGCAGAAATTCAATAGAAAGATCTGATCGATGTGATTGAGAAGCAGTCTGCTTGTATTTTGAATGGTTCCTTAATCAATATTTGCGATTTATGATCCATATTTACTGTATGGGGAGTTTACATTAATGCGTAAAGTTATTGTGGCAGGTCCTTTATGCTCCTGTCAATCCATTAGAGAGACAGACTCAAGAGATGCTTTATGCATTATATAGTGTGATGTTGTGCTTGGTATTAACTTGCCACTATGTCATGTCCTCTATCTATAGCCAGCGATACAACAACAGACTAAAACACTAAGAATAAAGGAAAAAAACTCACTTCGTTACTTAGTGCAGATAATTAAATCACAGACTTGAAAGACGTATGATGTAGCTACTGTATGCACTGGGATGGATGGCATGTAGCAGTAGTGTCCTTCACCAGCATAGTATAGTCTACTTTAACATGGAGTTGGGCTGCCTGTATGTATGTACACTAGACACTGTACAAGGAGGACAGGTTTGTACCTCCACAGTCAGGGCCAGGTACAGTTGCCAGCACTAAAAAGCTAGGTTGTACTGCAGTGTTATTTATACAGACAGAACAATTACTGCAAGGTGCTCAAGTACCTTCTAGCAAATAGGTGTGTCAAAAACCAGTATTGCAGACTGGGGCAGGATTTTAAAACCCTAACTTTTTAGCAACTGTAGATGAGAAGCTCTGGACCATGAACGCTGCCTAGTAGTGGAGGCACGTTCAGGTTCAGTTGTAATTTTACAACAAACATCGACGACGAACAACACTCGACTAATCTCACTGTATACAAAGCGGGGGGCACCACCTCCACGATATTATCGTACTATAGACATTAGTTAAGCTGAGAAGAGAGAGGGGCTAGGTTGATCTAGATACAAACAGGAGATACAAACAGGACATAGTCCAATGTTACTGCTCAAAAACATGACACACATTTAGTTCTTACGGTTTTATACGCCCCTTTTTTCTATTATGTATTTTcttctctgtaaaaaaaaaaagaagaagaagaagaaaagattCCTAAAATAGAGACGACCGCTTATAGTTCTAcgggaaagaagaagaagaagaagaagaagaagaagtacaAATGGACCATGTACTGATTCTGCTTGCTCCAAGTGGCATGGAAATCTACATTTCCTTCTAACTACATGAATCGTAATAACAGTAATATTAATAACAAtagtttaataaaaaaatattaaaaacataAGACAGGAAACCAATAATGTAACTTCCTCtgtagaaaacaaaaacaagaagaAGACTCCTAGTGCAGATACATAGCAATGTAAACCTGGTCCTATAACTAGTTTAgtgataatatagtataataacaTAGAAAGCGGGTcatttctttttttctctttttttttttctttttttaaaattcGTTCCTCTCACAGAGAGCGCTCACATCATAGTTTCTACAATAGTGTGGGTGGGCTTGATCAGGCCGTTGTTCCCGTTAGGGTCCAGGGGGTAGGCCAGCTCGGCGGACATGCCCTTGGGACGGTGGTCGACTGGACGGGAGCTAGCACCTCCCAGCGGAGCTGCCACAGCCTTGATCCTCTGGGtggggacaacaacaaaaaaaagctcTGTTTAACTCCACTAAATACCAATATACTGTACAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU744896 lncRNA downstream 1460 81645658 ~ 81646391 (-) True G655343
TU744864 lncRNA downstream 3473 81638545 ~ 81644378 (-) False G655316
TU744847 lncRNA downstream 72499 81574925 ~ 81575352 (-) True G655314
TU744846 lncRNA downstream 74479 81573018 ~ 81573372 (-) True G655313
TU744844 lncRNA downstream 81145 81566466 ~ 81566706 (-) True G655311
TU744957 lncRNA upstream 111408 81762673 ~ 81808717 (-) False G655392
TU744968 lncRNA upstream 120645 81771910 ~ 81777125 (-) True G655399
TU744971 lncRNA upstream 126192 81777457 ~ 81778172 (-) True G655401
TU744962 lncRNA upstream 143169 81794434 ~ 81805157 (-) True G655393
TU744958 lncRNA upstream 145840 81797105 ~ 81808717 (-) False G655392
XR_005052680.1 mRNA downstream 217251 81423132 ~ 81430600 (-) True LOC118965322
XM_021610731.2 mRNA downstream 294569 81351210 ~ 81353282 (-) False tma7
XM_036984201.1 mRNA downstream 334845 81301536 ~ 81313006 (-) True LOC110528600
XM_021610734.1 mRNA downstream 348108 81298907 ~ 81299743 (-) False LOC110528602
XM_036984187.1 mRNA downstream 924333 80656000 ~ 80723518 (-) False LOC110528585
XM_036984214.1 mRNA upstream 15421 81666686 ~ 81844047 (-) False LOC110528605
XM_036984215.1 mRNA upstream 15421 81666686 ~ 81844047 (-) False LOC110528605
XM_036984213.1 mRNA upstream 15421 81666686 ~ 81898007 (-) False LOC110528605
XM_036984211.1 mRNA upstream 15421 81666686 ~ 81992596 (-) False LOC110528605
XM_036984212.1 mRNA upstream 15421 81666686 ~ 81992596 (-) True LOC110528605
TU744829 other downstream 110753 81536557 ~ 81537098 (-) True G655297
TU744821 other downstream 131129 81515537 ~ 81516722 (-) True G655289
TU743208 other downstream 867160 80778760 ~ 80780691 (-) False G653977
TU743209 other downstream 867160 80778760 ~ 80780691 (-) False G653977
TU743122 other downstream 986823 80650590 ~ 80661028 (-) False LOC110528585
TU744948 other upstream 102290 81753555 ~ 81753966 (-) True G655387
TU745007 other upstream 181413 81832678 ~ 81833031 (-) True G655433
TU745026 other upstream 208106 81859371 ~ 81871057 (-) False G655447
TU745022 other upstream 211143 81862408 ~ 81871517 (-) True G655447
TU745049 other upstream 263443 81914708 ~ 81915510 (-) True G655469

Expression Profile