RNA id: TU744059


Basic Information

Item Value
RNA id TU744059
length 940
RNA type TUCP
GC content 0.42
exon number 2
gene id G654673
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81744527 ~ 81808727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgttccGGTTGATGAATGCTCAAGTCAgagttgacctctctctctcttctatcttgATGTGCTTGCTTGCTTGCCTGTCTCATACCCTCATGGAAtactttcacaaaaaaaaaaGAAACATTTCAGTAAATGAGGGTGGATCTGCTGGctctgttatggtgtggggtgcattttcctggcatggtttaggtcCACTCAACCACTTAGAGGGAACGGTAAACACCAATAAATACACAGCCATTCTGAGTGACCGCCTTCAACCTATGGTGAATCAGATCTATCCTGATGGGAGTGGTCTCTTCCAGgatgacaacccccccccccccccccccccccccatccattagggaacgagtggtcactgaatggtttgatgagcaggaaaatgatgtaaaccatatgccatggccgtctcagtcaccagatctcaacccaattgaacacttatgggagattctagaGCGGCACCTGAGACAACATTTTCCACAGTTCTCCTGAAAGAATGGTGCTCGcatccaatagagttccagacaaaTCTATACCGAGgctcattgaagctgttctggcggctgGTGGAGAGGAGAGCCTAACGTCCTATTTACACAATtgatgttttctttattttggaaGTTAACAGTATGTTGATAATAGTCTGAATATTGCTGATATATTCTGGTAGAACGCTACTTTGAATTACATTTCTGAATGAAaggcacacacgcaggcacacacaaatCATGTTCAGATTTCATAAAATGAGGTGTATAATATCATTGAATATATGCTGTAAatcaatttacatttttacatgATTTGTATATATTATACAGTTTGTCTGCTACTTGTGCTTTCATCATGCTGAACATAAACAATGTGTACTTCCTGCTTATTCAGTATATAATTGAACCTCGATTAAAGACATTTCCTTGTTGAATAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU744004 lncRNA upstream 25438 81741489 ~ 81741787 (+) True G654671
TU743986 lncRNA upstream 46569 81719370 ~ 81720656 (+) True G654653
TU743964 lncRNA upstream 76648 81689994 ~ 81690577 (+) True G654633
TU743950 lncRNA upstream 98165 81666717 ~ 81669060 (+) True G654621
TU743913 lncRNA upstream 100685 81581028 ~ 81666540 (+) True G654586
TU744160 lncRNA downstream 30199 81838926 ~ 81839232 (+) True G654718
TU744164 lncRNA downstream 34928 81843655 ~ 81843901 (+) True G654722
TU744168 lncRNA downstream 47499 81856226 ~ 81856447 (+) True G654726
TU744176 lncRNA downstream 53156 81861883 ~ 81871527 (+) False G654729
TU744171 lncRNA downstream 62443 81871170 ~ 81871527 (+) True G654729
XM_036984208.1 mRNA upstream 114284 81606542 ~ 81652941 (+) True LOC110528591
XM_036984209.1 mRNA upstream 157195 81606847 ~ 81610030 (+) False LOC118965323
XM_036984210.1 mRNA upstream 157195 81606855 ~ 81610030 (+) True LOC118965323
XM_021610723.2 mRNA upstream 329033 81432052 ~ 81438192 (+) True lsm3
XM_021610722.2 mRNA upstream 345752 81388173 ~ 81421473 (+) True podxl2
XR_005052681.1 mRNA downstream 333679 82142406 ~ 82145175 (+) False LOC118965324
XM_036984221.1 mRNA downstream 353700 82162427 ~ 82180242 (+) True LOC110529047
XM_036984222.1 mRNA downstream 389606 82198333 ~ 82329870 (+) True LOC110529049
XM_036984224.1 mRNA downstream 545673 82354400 ~ 82764765 (+) False dock3
XM_036984227.1 mRNA downstream 545673 82354400 ~ 82764765 (+) False dock3
TU743930 other upstream 191802 81574942 ~ 81575423 (+) True G654603
TU743538 other upstream 416025 81326323 ~ 81351200 (+) False G654265
TU743539 other upstream 416025 81326323 ~ 81351200 (+) False G654265
TU743536 other upstream 421579 81326323 ~ 81345646 (+) False G654265
TU743514 other upstream 557681 81209156 ~ 81209544 (+) True G654244
TU744236 other downstream 142275 81951002 ~ 81951392 (+) True G654782
TU744537 other downstream 650358 82459085 ~ 82459667 (+) True G655042
TU745825 other downstream 1347287 83156014 ~ 83156319 (+) True G656125
TU745971 other downstream 1458421 83267148 ~ 83272209 (+) True G656264
TU746281 other downstream 1750110 83558837 ~ 83560518 (+) True G656551

Expression Profile