RNA id: TU745042


Basic Information

Item Value
RNA id TU745042
length 931
lncRNA type intronic
GC content 0.40
exon number 1
gene id G655462
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81899792 ~ 81900722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcctacatgttagagacacttcagtacagaacatcctacatgttagagactcttcattacagaacatcctacatgttagagactcttcagtagactacatcctacatgttagagactcttcagtacagaacatcctacatgttagagactcttcagtagactacatcctacatgttagagactcttcagtacagaacatcctacatgttagagactcttcagtagaatacatcctacatgttagagactcttcagtagactacatcctacatgttagagactcttcagtagactacatcctacatgttagagactcttcagtacagaacatcctacatgttagagactcttcagtacagaacatcctacatgttagagactcttcagtacagaacatcctacatgttagagactcttcagtacagaacatcctacatgttagagactcttcagtagactacatcctacatgttagagactcttcagtagactacatcctccatgttagagactcttcagtagactacatcctacatgttagagactcttcagtacagaacatcctacatgttagagactcttcagtacagaacatcctacatgttagagactcttcagtagactacatcctacatgttagagactcttcagtagactacatcctacatgttagagactattcagtacagaacatcctacatgttagagactcttcagtacagaataGCCtgcatgttagagactcttcagtacagaacatcctacatgttagagactcttcagtacagaacatcctacatgttagagactcttcaggaCAGACCATCCTACATGTTAgtgactcttcagtacagaacatcctacatgttagagacactTCAGTACTTTGATTTTCCATTCTCTCCCAACCCCACCTCACTCCATCAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU745040 lncRNA downstream 13070 81886506 ~ 81886722 (-) True G655460
TU745039 lncRNA downstream 13932 81884608 ~ 81885860 (-) True G655459
TU745036 lncRNA downstream 17089 81882262 ~ 81882703 (-) True G655457
TU745030 lncRNA downstream 26118 81873453 ~ 81873674 (-) True G655451
TU745018 lncRNA downstream 44527 81854471 ~ 81855265 (-) True G655444
TU745043 lncRNA upstream 74 81900796 ~ 81901363 (-) True G655463
TU745057 lncRNA upstream 22746 81923468 ~ 81923882 (-) True G655477
TU745059 lncRNA upstream 28182 81928904 ~ 81929315 (-) True G655479
TU745061 lncRNA upstream 32205 81932927 ~ 81933242 (-) True G655481
TU745078 lncRNA upstream 46650 81947372 ~ 81948165 (-) True G655495
XM_036984213.1 mRNA downstream 1785 81666686 ~ 81898007 (-) False LOC110528605
XM_036984214.1 mRNA downstream 55745 81666686 ~ 81844047 (-) False LOC110528605
XM_036984215.1 mRNA downstream 55745 81666686 ~ 81844047 (-) False LOC110528605
XR_005052680.1 mRNA downstream 469192 81423132 ~ 81430600 (-) True LOC118965322
XM_021610731.2 mRNA downstream 546510 81351210 ~ 81353282 (-) False tma7
XM_021610740.2 mRNA upstream 220616 82121338 ~ 82132214 (-) False sec13
XM_036984220.1 mRNA upstream 220616 82121338 ~ 82132214 (-) True sec13
XM_021610741.2 mRNA upstream 244546 82145268 ~ 82152444 (-) True LOC110528607
XM_036984462.1 mRNA upstream 958659 82859381 ~ 82860786 (-) True LOC118965368
XM_036984233.1 mRNA upstream 971987 82872709 ~ 83038968 (-) False LOC110525201
TU745022 other downstream 28275 81862408 ~ 81871517 (-) True G655447
TU745026 other downstream 28735 81859371 ~ 81871057 (-) False G655447
TU745007 other downstream 66761 81832678 ~ 81833031 (-) True G655433
TU744948 other downstream 145826 81753555 ~ 81753966 (-) True G655387
TU744851 other downstream 248527 81622403 ~ 81651265 (-) False G655316
TU745049 other upstream 13986 81914708 ~ 81915510 (-) True G655469
TU745266 other upstream 325230 82225952 ~ 82226545 (-) True G655651
TU745346 other upstream 427676 82328398 ~ 82333298 (-) False G655715
TU746032 other upstream 1426757 83327479 ~ 83328180 (-) True G656314
TU746415 other upstream 1707810 83608532 ~ 83615998 (-) True G656671

Expression Profile