RNA id: TU745078



Basic Information


Item Value
RNA id TU745078
length 474
lncRNA type intronic
GC content 0.38
exon number 2
gene id G655495
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81947372 ~ 81948165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttgagtTTGCCTCCCCCTCACAGTCCCCATCGTTCCATGAGATGttgtttaatctgttttttaaaggtAATTTTGCTGTTTGCTCAGTATTTGGAGATGGGAGTTCCATgagatcatggctctgtataatactgtgaagAGAGTTCCATGAGATCATGGCTCTGTACAATACTGTGAAGGTAGTTCCATgagatcatggctctgtataatactgtgaaaGTAGTTACATGAgatcatggctctatataatactgtgaAGGTAGTTCCATgagatcatggctctgtataatactgtgaaggtagttccatgtgatcatggctctgtataatactgtgaggGGAGcgtcctcaacttgctcaatagaCACACCCTTTATACACAATTCCAGTTGAGATTTAAGGCTTAGAGAatgttttgaaccaaatacaatgtttttagttttagATGTATTTAATTAAGACCAGTTTATTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU745061 lncRNA downstream 14130 81932927 ~ 81933242 (-) True G655481
TU745059 lncRNA downstream 18057 81928904 ~ 81929315 (-) True G655479
TU745057 lncRNA downstream 23490 81923468 ~ 81923882 (-) True G655477
TU745043 lncRNA downstream 46009 81900796 ~ 81901363 (-) True G655463
TU745042 lncRNA downstream 46650 81899792 ~ 81900722 (-) True G655462
TU745080 lncRNA upstream 858 81949023 ~ 81949267 (-) True G655496
TU745082 lncRNA upstream 1878 81950043 ~ 81950634 (-) True G655497
TU745086 lncRNA upstream 7623 81955788 ~ 81956029 (-) True G655501
TU745087 lncRNA upstream 9028 81957193 ~ 81958150 (-) True G655502
TU745094 lncRNA upstream 19950 81968115 ~ 81968394 (-) True G655509
XM_036984213.1 mRNA downstream 49365 81666686 ~ 81898007 (-) False LOC110528605
XM_036984214.1 mRNA downstream 103325 81666686 ~ 81844047 (-) False LOC110528605
XM_036984215.1 mRNA downstream 103325 81666686 ~ 81844047 (-) False LOC110528605
XR_005052680.1 mRNA downstream 516772 81423132 ~ 81430600 (-) True LOC118965322
XM_021610731.2 mRNA downstream 594090 81351210 ~ 81353282 (-) False tma7
XM_021610740.2 mRNA upstream 173173 82121338 ~ 82132214 (-) False sec13
XM_036984220.1 mRNA upstream 173173 82121338 ~ 82132214 (-) True sec13
XM_021610741.2 mRNA upstream 197103 82145268 ~ 82152444 (-) True LOC110528607
XM_036984462.1 mRNA upstream 911216 82859381 ~ 82860786 (-) True LOC118965368
XM_036984233.1 mRNA upstream 924544 82872709 ~ 83038968 (-) False LOC110525201
TU745049 other downstream 31862 81914708 ~ 81915510 (-) True G655469
TU745022 other downstream 75855 81862408 ~ 81871517 (-) True G655447
TU745026 other downstream 76315 81859371 ~ 81871057 (-) False G655447
TU745007 other downstream 114341 81832678 ~ 81833031 (-) True G655433
TU744948 other downstream 193406 81753555 ~ 81753966 (-) True G655387
TU745266 other upstream 277787 82225952 ~ 82226545 (-) True G655651
TU745346 other upstream 380233 82328398 ~ 82333298 (-) False G655715
TU746032 other upstream 1379314 83327479 ~ 83328180 (-) True G656314
TU746415 other upstream 1660367 83608532 ~ 83615998 (-) True G656671
TU747690 other upstream 2006082 83954247 ~ 83956768 (-) True LOC110528632

Expression Profile