RNA id: TU745428



Basic Information


Item Value
RNA id TU745428
length 206
lncRNA type intronic
GC content 0.54
exon number 2
gene id G655780
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 82473713 ~ 82481540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAAGAACAGAGATTAGAGTCTGGCACCTGGCTCCTCCTACTGACACCCTGCATTCCACCAGTCAGGACATCACCAACATATAGttctgccctctctgactctggtccctgtctccagtctcACGTCTCCTCATCCTGCTACTCTctcctggattccccactctactactcccttggattcccctccggacctgcttaccctgtcc

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU745411 lncRNA downstream 20544 82452327 ~ 82453169 (-) True G655766
TU745412 lncRNA downstream 22878 82450498 ~ 82450835 (-) True G655767
TU745394 lncRNA downstream 55948 82413457 ~ 82417765 (-) True G655751
TU745368 lncRNA downstream 60342 82364649 ~ 82413371 (-) True G655731
TU745385 lncRNA downstream 73937 82397001 ~ 82399776 (-) True G655743
TU745448 lncRNA upstream 36157 82517697 ~ 82518811 (-) True G655800
TU745481 lncRNA upstream 109643 82591183 ~ 82592966 (-) True G655832
TU745498 lncRNA upstream 151062 82632602 ~ 82633131 (-) True G655848
TU745563 lncRNA upstream 268126 82749666 ~ 82751909 (-) True G655902
TU745569 lncRNA upstream 272935 82754475 ~ 82756103 (-) False G655908
XM_021610741.2 mRNA downstream 321269 82145268 ~ 82152444 (-) True LOC110528607
XM_021610740.2 mRNA downstream 341499 82121338 ~ 82132214 (-) False sec13
XM_036984220.1 mRNA downstream 341499 82121338 ~ 82132214 (-) True sec13
XM_036984211.1 mRNA downstream 481117 81666686 ~ 81992596 (-) False LOC110528605
XM_036984462.1 mRNA upstream 377841 82859381 ~ 82860786 (-) True LOC118965368
XM_036984233.1 mRNA upstream 391169 82872709 ~ 83038968 (-) False LOC110525201
XM_036984234.1 mRNA upstream 391169 82872709 ~ 83038970 (-) False LOC110525201
XM_036984236.1 mRNA upstream 391169 82872709 ~ 83038970 (-) False LOC110525201
XM_036984231.1 mRNA upstream 391169 82872709 ~ 83038971 (-) False LOC110525201
TU745346 other downstream 140415 82328398 ~ 82333298 (-) False G655715
TU745266 other downstream 247168 82225952 ~ 82226545 (-) True G655651
TU745049 other downstream 558203 81914708 ~ 81915510 (-) True G655469
TU745022 other downstream 602196 81862408 ~ 81871517 (-) True G655447
TU745026 other downstream 602656 81859371 ~ 81871057 (-) False G655447
TU746032 other upstream 845939 83327479 ~ 83328180 (-) True G656314
TU746415 other upstream 1126992 83608532 ~ 83615998 (-) True G656671
TU747690 other upstream 1472707 83954247 ~ 83956768 (-) True LOC110528632
TU748303 other upstream 2525186 85006726 ~ 85007505 (-) False G658255
TU748304 other upstream 2525186 85006726 ~ 85007505 (-) False G658255

Expression Profile


TU745428 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

TU745428 Expression in each Bioproject

Bar chart with 8 bars.
TU745428 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
End of interactive chart.