RNA id: TU746231


Basic Information

Item Value
RNA id TU746231
length 274
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G656502
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 83493521 ~ 83493852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcaaacccagaatctctagttgCACAGAAACactgtagctactagctaggtaccTTAAACactgtagctactagctagGTACCATAAAGattgtagctactagctaggtaccATAAACATAGTAGAAACTAGCTAGGTACCATAAACATAGTAGAAACTAGCTAGGTACAATAAACACTGTAGTTACTAGCTAGGTACCATAAAGattgtagctactagctaggtaccATAAACATAGTAGAAACTAGCTAGGTACCTTAAACactgtagcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU746160 lncRNA downstream 46091 83447153 ~ 83447430 (-) True G656437
TU746112 lncRNA downstream 86306 83406994 ~ 83407215 (-) True G656394
TU746108 lncRNA downstream 88330 83404961 ~ 83405191 (-) True G656390
TU746052 lncRNA downstream 145492 83347795 ~ 83348029 (-) True G656334
TU746007 lncRNA downstream 196618 83296674 ~ 83296903 (-) True G656289
TU746398 lncRNA upstream 44118 83537970 ~ 83538232 (-) True G656655
TU746404 lncRNA upstream 52678 83546530 ~ 83546732 (-) True G656661
TU746455 lncRNA upstream 148039 83641891 ~ 83696614 (-) True G656707
TU746470 lncRNA upstream 166512 83660364 ~ 83662367 (-) True G656719
TU746556 lncRNA upstream 267424 83761276 ~ 83762613 (-) False G656793
XM_036984463.1 mRNA downstream 437089 83056001 ~ 83056432 (-) True LOC118965369
XM_036984232.1 mRNA downstream 454548 82872709 ~ 83038973 (-) False LOC110525201
XM_036984235.1 mRNA downstream 454548 82872709 ~ 83038973 (-) False LOC110525201
XM_036984237.1 mRNA downstream 454549 82876926 ~ 83038972 (-) True LOC110525201
XM_036984231.1 mRNA downstream 454550 82872709 ~ 83038971 (-) False LOC110525201
XR_005052682.1 mRNA upstream 65686 83559538 ~ 83560418 (-) True LOC118965325
XM_036984239.1 mRNA upstream 237333 83731185 ~ 83735497 (-) True LOC110528625
XM_036981845.1 mRNA upstream 394592 83888444 ~ 83905266 (-) False stl3
NM_001124197.1 mRNA upstream 408173 83902025 ~ 83905160 (-) True stl3
XM_036984245.1 mRNA upstream 420019 83913871 ~ 83917078 (-) False LOC110528630
TU746032 other downstream 165341 83327479 ~ 83328180 (-) True G656314
TU745346 other downstream 1160223 82328398 ~ 82333298 (-) False G655715
TU745266 other downstream 1266976 82225952 ~ 82226545 (-) True G655651
TU745049 other downstream 1578011 81914708 ~ 81915510 (-) True G655469
TU745022 other downstream 1622004 81862408 ~ 81871517 (-) True G655447
TU746415 other upstream 114680 83608532 ~ 83615998 (-) True G656671
TU747690 other upstream 460395 83954247 ~ 83956768 (-) True LOC110528632
TU748303 other upstream 1512874 85006726 ~ 85007505 (-) False G658255
TU748304 other upstream 1512874 85006726 ~ 85007505 (-) False G658255
TU748305 other upstream 1512874 85006726 ~ 85007505 (-) True G658255

Expression Profile