RNA id: TU746281



Basic Information


Item Value
RNA id TU746281
length 803
RNA type TUCP
GC content 0.40
exon number 2
gene id G656551
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 83558837 ~ 83560518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACCTCTCCATGACCCTAATACATCATGTAGTACCACCTCTCCATGACCCTAATACATCatgtagtaatatagtagtaccaCCTCTCCATTAGCCTAATACATCATGTAGTACCACCTCTCCATGACCCTAATACATCATGTAGTACCACCTCTCCATGACCCTAATACATCatgtagtaatatagtagtaccaCCTCTCCATGACCCTAATACATCatgtagtaatatagtagtaccaCCTCTCCATCACCCTAATACATCatgtagtaatatagtagtaccaCCTCTCCATGACCCTAATACATCatgtagtaatatagtagtaccaCCTCTCCATGACCCTAATACATCatgtagtaatatagtagtaccaCCTCTCCATTACCCTAATACATCatgtagtaatatagtagtaccaCCTCTCCATGACCCTAATACATCatgtagtaatatagtagtaccaCCTCTCCATTACCCTAATACATCATGTAGTACCACCTCTCCATGACCCTAATACATcatgtagtattatagtagtaccaCCTCTCCATTAGCCTAATACATCATGAAGGTGGTGATCATTATAATCGTGTGAACATGACAGATTACTTCCATAGACCCTTCGGTTCAGTGTTGATTCATAATTGTAGTGCTCTCAGGTGAACCTTGTCACATGATACGGGGTTTGAACTCTCTCTGTtcgtgtacatgtgtgtgtacgtgtgtgcacgtctgtgtgtctgtgtgtttgtgtgtgtcatggGGTAACGATGAATACACATACTCACACTACAGACACtca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU746184 lncRNA upstream 65142 83493305 ~ 83493695 (+) True G656459
TU746172 lncRNA upstream 83554 83474847 ~ 83475283 (+) True G656448
TU746159 lncRNA upstream 111300 83447315 ~ 83447537 (+) True G656436
TU746158 lncRNA upstream 111627 83446978 ~ 83447210 (+) True G656435
TU746101 lncRNA upstream 161817 83396734 ~ 83397020 (+) True G656383
TU746305 lncRNA downstream 28052 83588570 ~ 83588915 (+) True G656567
TU746318 lncRNA downstream 56255 83616773 ~ 83617524 (+) True G656580
TU746321 lncRNA downstream 60341 83620859 ~ 83622188 (+) True G656583
TU746521 lncRNA downstream 179637 83740155 ~ 83740369 (+) True G656760
TU746573 lncRNA downstream 229634 83790152 ~ 83790443 (+) True G656808
XM_036984464.1 mRNA upstream 248465 83265536 ~ 83310372 (+) True LOC118965370
LOC118965402 mRNA upstream 403118 83155619 ~ 83155719 (+) True LOC118965402
XM_021605164.2 mRNA upstream 775915 82778373 ~ 82782922 (+) True LOC110525199
XM_021605169.2 mRNA upstream 780794 82773777 ~ 82778043 (+) True LOC110525202
XM_036984229.1 mRNA upstream 794072 82354401 ~ 82764765 (+) False dock3
XM_021611193.2 mRNA downstream 150843 83711361 ~ 83712203 (+) True LOC110529053
XM_036984240.1 mRNA downstream 199220 83759738 ~ 83782465 (+) False nicn1
XM_036984241.1 mRNA downstream 199220 83759738 ~ 83782465 (+) True nicn1
XM_036984494.1 mRNA downstream 240093 83800611 ~ 83802600 (+) True LOC118965393
XM_036984242.1 mRNA downstream 317824 83878342 ~ 83881586 (+) False LOC110528627
TU745971 other upstream 286628 83267148 ~ 83272209 (+) True G656264
TU745825 other upstream 402518 83156014 ~ 83156319 (+) True G656125
TU744537 other upstream 1099170 82459085 ~ 82459667 (+) True G655042
TU744236 other upstream 1607445 81951002 ~ 81951392 (+) True G654782
TU744059 other upstream 1750110 81767225 ~ 81808727 (+) True G654673
TU747043 other downstream 943031 84503549 ~ 84520418 (+) True G657228
TU747071 other downstream 991478 84551996 ~ 84554773 (+) True G657254
TU747111 other downstream 1052311 84612829 ~ 84618717 (+) False G657292
TU747113 other downstream 1054145 84614663 ~ 84618035 (+) False G657292
TU747353 other downstream 1445961 85006479 ~ 85007498 (+) False G657481

Expression Profile