RNA id: TU746686


Basic Information

Item Value
RNA id TU746686
length 1432
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G656908
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 83954249 ~ 83955731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAACGTACATTTTTATCTCCCACAATATTGGACCATAAGCAGCAAGGGCAACATAAATATACTTAGTacaaacagtataaaacatacatgcttttttttctctcttttttttttgatTGGTtcctttttaaatatatattcatattttttacTGACAATTTTTCATAGTTGCGGGGCATTAAGAAAAACTCCAAGACGAATTAAAGCCATATTCTGCATTCAGtgagaaaatgtaaaaaaaaaatatatatagatattgtATGCCATTCAGAGCTAGTGGATCACGTGTGGTGAAATCTCCAGTTATTGACTTAATCTTAACATCAAACATAGCTGGCATGCATTGACAACTTCTACACGGGGACATATACCTTGTTAAATCTGAGTCATTGGAGTTTTTTATATCGAGCCAACAAAGCCTTGACTTGACTGGAGCTCTCTTTTAGTCCATTGAAAAACACAGTTGATGGTCAATACTGTACCCTTACAACATACTAAAAACATGTCTGTCGAAACACACACATACGGGAAGGGAAAAAGCAAGCACTGTACCTCTCTTTGCTTGTGAGCCCACATACaaccacccccccccaaaaaaacatgaaCATCTGAACATCTCAAAGACAAGAATATGGCTTTAATTGAATGTGCGTCCAAGAAGCAAAGAAGGAAAAAACAGACAAGCAAAAAGAAAAAGTTTGATATTAAAAATTTAACAACAAATGTAACAGATAggccaatagaaacacacactTCTTTTGACAGGAATTTTGGAAAACTTGCATTTTGGAAGGACATTAAAAGACAAGAAACAGCCTCCATTGAAGGTACAGGCAGGTACAAGTACAGTTAGTCCTCCTGCTGCAGCCTGTGTACCTGTAGAGACGCATCTCTAGGGAGTGGGGGACCATCTCTGAGGGGTCGGCAGAGACGACCACCCTAACCCGGAGGGGCACAGGGGGGTTGTGGCGCCAGCAGGGAGGGTCTGTGCTTCTTTTTTTCTTTGCAGTCATTTTGCAAAACAAATGATTTAGTAGATATTTTTTTGCCCATCAGAACTGTCTTGATTTTCTTTAAATTTTTTCTTGACGTTTTACACCCACAGTATGTCTCTTTTTTGGTCTTTTCCATTCCATCGTAACCATGTTAAAACATCGGTTTGCCACACAGAATCTTGTGGTTGAATAGAAAGCTCTTAGAACCCAGAACCCACCCATTGTCCCTGTCCTGTTCCGGAGTTCCGGGGTTCCTTTGGTGCGAGGGTTCCGGGGTGTGAGTGGGCAATAGAGCAGCGTGAACATAAACATCCTTTTTCTTTCGTTGCCAACGGGTCAGGAGACCAAGCATCTCCATCCATCGTGTCCCTCTCCCCGGTGACGGCTCTTAGATCACAAGGTCATTGTAACTCACATATTTCTTCTTTGCTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU746680 lncRNA upstream 5176 83948841 ~ 83949073 (+) True G656905
TU746679 lncRNA upstream 5582 83948442 ~ 83948667 (+) True G656904
TU746677 lncRNA upstream 11750 83942226 ~ 83942499 (+) True G656902
TU746652 lncRNA upstream 45758 83896163 ~ 83908491 (+) True G656878
TU746645 lncRNA upstream 64334 83889172 ~ 83889915 (+) True G656871
TU746714 lncRNA downstream 51443 84007174 ~ 84007893 (+) True G656934
TU746720 lncRNA downstream 60775 84016506 ~ 84016973 (+) True G656940
TU746758 lncRNA downstream 129401 84085132 ~ 84085641 (+) True G656976
TU746851 lncRNA downstream 236923 84192654 ~ 84196257 (+) True G657057
TU746872 lncRNA downstream 280619 84236350 ~ 84236842 (+) True G657077
XM_036984242.1 mRNA upstream 72663 83878342 ~ 83881586 (+) False LOC110528627
XR_005052683.1 mRNA upstream 72663 83878342 ~ 83881586 (+) False LOC110528627
XM_036984243.1 mRNA upstream 72663 83878390 ~ 83881586 (+) True LOC110528627
XM_036984494.1 mRNA upstream 151649 83800611 ~ 83802600 (+) True LOC118965393
XM_036984241.1 mRNA upstream 171784 83759738 ~ 83782465 (+) True nicn1
XM_036984465.1 mRNA downstream 416466 84372197 ~ 84401519 (+) True LOC118965371
XM_021610778.2 mRNA downstream 948897 84904628 ~ 84909361 (+) True amigo3
XR_002474287.2 mRNA downstream 1338497 85294228 ~ 85297684 (+) True LOC110528638
XM_036984258.1 mRNA downstream 1345823 85301554 ~ 85363683 (+) False LOC110528636
XM_036984259.1 mRNA downstream 1345823 85301554 ~ 85363683 (+) True LOC110528636
TU746281 other upstream 393731 83558837 ~ 83560518 (+) True G656551
TU745971 other upstream 682040 83267148 ~ 83272209 (+) True G656264
TU745825 other upstream 797930 83156014 ~ 83156319 (+) True G656125
TU744537 other upstream 1494582 82459085 ~ 82459667 (+) True G655042
TU744236 other upstream 2002857 81951002 ~ 81951392 (+) True G654782
TU747043 other downstream 547818 84503549 ~ 84520418 (+) True G657228
TU747071 other downstream 596265 84551996 ~ 84554773 (+) True G657254
TU747111 other downstream 657098 84612829 ~ 84618717 (+) False G657292
TU747113 other downstream 658932 84614663 ~ 84618035 (+) False G657292
TU747353 other downstream 1050748 85006479 ~ 85007498 (+) False G657481

Expression Profile