RNA id: TU747068


Basic Information

Item Value
RNA id TU747068
length 437
lncRNA type inter_gene
GC content 0.32
exon number 4
gene id G657251
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 84546177 ~ 84548123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATTTATAGACTTTTTAAACACAAAAATTCCGAGGCGATACATTCTAATTCATTCTTCCACTAATTAGTAAGAGTCACCACTTTAAAACGTTGTGGTGAGGCCATGACAACAGTATCTAATGAGACCATAAATAACAGGTAGGTTGTTATGACAACAGTATATAATGAGACCATAAGTAACAGGTAGGTTGTTATGACAACAGTATATAATGAGACCATAAGTAACAGCTAGGTTGTTATAACAACAGTATCTAATGAGACCATAAATAACAGCTAGGTTGTTATAACAACAGTATCTAATGAGACCATAAATAACAGCTAGGTTGTTATAACAACAGTATCTAATGAGACCATAAATAACAGGTAGGTTGTTATGACAACAGTATATAATGAGACCATAAATAACAGGTAGGTTGTTATAACAACAGTATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU747055 lncRNA upstream 16379 84528954 ~ 84529798 (+) True G657240
TU746953 lncRNA upstream 115377 84364680 ~ 84430800 (+) True G657146
TU746904 lncRNA upstream 269359 84274571 ~ 84276818 (+) True G657103
TU746872 lncRNA upstream 309335 84236350 ~ 84236842 (+) True G657077
TU746851 lncRNA upstream 349920 84192654 ~ 84196257 (+) True G657057
TU747115 lncRNA downstream 69984 84618107 ~ 84618717 (+) True G657292
TU747131 lncRNA downstream 109616 84657739 ~ 84658261 (+) True G657308
TU747203 lncRNA downstream 210017 84758140 ~ 84758689 (+) True G657370
TU747233 lncRNA downstream 264560 84812683 ~ 84813091 (+) True G657391
TU747242 lncRNA downstream 293211 84841334 ~ 84844996 (+) False G657399
XM_036984465.1 mRNA upstream 144658 84372197 ~ 84401519 (+) True LOC118965371
XM_036984242.1 mRNA upstream 664591 83878342 ~ 83881586 (+) False LOC110528627
XR_005052683.1 mRNA upstream 664591 83878342 ~ 83881586 (+) False LOC110528627
XM_036984243.1 mRNA upstream 664591 83878390 ~ 83881586 (+) True LOC110528627
XM_036984494.1 mRNA upstream 743577 83800611 ~ 83802600 (+) True LOC118965393
XM_021610778.2 mRNA downstream 356505 84904628 ~ 84909361 (+) True amigo3
XR_002474287.2 mRNA downstream 746105 85294228 ~ 85297684 (+) True LOC110528638
XM_036984258.1 mRNA downstream 753431 85301554 ~ 85363683 (+) False LOC110528636
XM_036984259.1 mRNA downstream 753431 85301554 ~ 85363683 (+) True LOC110528636
XM_036984264.1 mRNA downstream 1003670 85551793 ~ 85617509 (+) False pusl1
TU747043 other upstream 25759 84503549 ~ 84520418 (+) True G657228
TU746281 other upstream 985659 83558837 ~ 83560518 (+) True G656551
TU745971 other upstream 1273968 83267148 ~ 83272209 (+) True G656264
TU745825 other upstream 1389858 83156014 ~ 83156319 (+) True G656125
TU744537 other upstream 2086510 82459085 ~ 82459667 (+) True G655042
TU747071 other downstream 3873 84551996 ~ 84554773 (+) True G657254
TU747111 other downstream 64706 84612829 ~ 84618717 (+) False G657292
TU747113 other downstream 66540 84614663 ~ 84618035 (+) False G657292
TU747353 other downstream 458356 85006479 ~ 85007498 (+) False G657481
TU747351 other downstream 458457 85006580 ~ 85007498 (+) True G657481

Expression Profile