RNA id: TU748078


Basic Information

Item Value
RNA id TU748078
length 636
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G658076
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 84601010 ~ 84603645 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagggagagggagatgcagagagagacagaaagagtcagagagagagagaagcagagagagagaaagagagagagagatgcttaaCAATGTAAAGGGAAGGCGAAGATCAGCTTGGTAATTAAGTAGTGAACTTGGGCAGGTAATTAAGTAGTGAACTAGGGCAGGTAATTAAGTAGTGAACTTGGGCAGGTAGTTAAGTAGTGAACTTGGGCAGGTAATTAAGTAGTGAACTTGGGCAGGTAATTAAGTAGTGAACTTGGGCAGGTAATTAAGTAGTAAACTTGGGCAGGTAATTAAGTAGTGAACTTTGTCACGaattccgccgaagtcggtccctctccttgttcgggcagcgttcggcggtcgacgtcaccagccttctagccatcgccgatacacttttcattttccatttgttttgtctttgtttttgttttacacaccacaccacacttcaattccccaattacatgttctttatttaaccctctgttttctccatggtttttgtgcgtgtttgtttgttGGCTGAGAAATGTTtgttcaggggtggagatggagagtgaccacaATTTAGCCGTGCGTAATCGGCCAACTCCCACCAtagtaaaggaggtgcagcggtttctaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU748028 lncRNA downstream 82362 84513483 ~ 84518648 (-) True G658036
TU747931 lncRNA downstream 313676 84286343 ~ 84287334 (-) True G657950
TU747926 lncRNA downstream 315770 84283551 ~ 84285240 (-) True G657949
TU747915 lncRNA downstream 324092 84274985 ~ 84276918 (-) False G657943
TU748088 lncRNA upstream 10838 84614483 ~ 84619197 (-) False G658081
TU748086 lncRNA upstream 11566 84615211 ~ 84619197 (-) True G658081
TU748152 lncRNA upstream 144200 84747845 ~ 84752020 (-) False G658143
TU748153 lncRNA upstream 144200 84747845 ~ 84751862 (-) True G658143
TU748179 lncRNA upstream 193643 84797288 ~ 84799006 (-) True G658161
XM_036984246.1 mRNA downstream 268101 83954195 ~ 84332909 (-) False LOC110528632
XM_036984247.1 mRNA downstream 268101 83954195 ~ 84332909 (-) False LOC110528632
XM_036984244.1 mRNA downstream 683896 83913871 ~ 83917114 (-) True LOC110528630
XM_036984245.1 mRNA downstream 683932 83913871 ~ 83917078 (-) False LOC110528630
NM_001124197.1 mRNA downstream 695850 83902025 ~ 83905160 (-) True stl3
XM_036984249.1 mRNA upstream 240686 84844331 ~ 85106458 (-) False LOC110529055
XM_036984250.1 mRNA upstream 240686 84844331 ~ 85106458 (-) False LOC110529055
XM_036984248.1 mRNA upstream 240686 84844331 ~ 85106696 (-) True LOC110529055
XM_021610776.2 mRNA upstream 503326 85106971 ~ 85119900 (-) False LOC110528641
XM_036984251.1 mRNA upstream 503326 85106971 ~ 85119900 (-) False LOC110528641
TU747690 other downstream 644242 83954247 ~ 83956768 (-) True LOC110528632
TU746415 other downstream 985012 83608532 ~ 83615998 (-) True G656671
TU746032 other downstream 1272830 83327479 ~ 83328180 (-) True G656314
TU745346 other downstream 2267712 82328398 ~ 82333298 (-) False G655715
TU745266 other downstream 2374465 82225952 ~ 82226545 (-) True G655651
TU748303 other upstream 403081 85006726 ~ 85007505 (-) False G658255
TU748304 other upstream 403081 85006726 ~ 85007505 (-) False G658255
TU748305 other upstream 403081 85006726 ~ 85007505 (-) True G658255
TU749640 other upstream 1556597 86160242 ~ 86160923 (-) True G659250
TU750071 other upstream 2028762 86632407 ~ 86633856 (-) True G659543

Expression Profile