RNA id: TU748088


Basic Information

Item Value
RNA id TU748088
length 1688
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G658081
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 84614483 ~ 84619197 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatacagaggaacagatacagaggatcatatacagaggaacagatacagagaggaacagatacagagaggaacagatacagaggatcagatacagaggaacagatacagagaggaacagatacagagaggaacagatacagagaggaacagatacagcggaacagatacagagaggaacagatacacaGAGGAatagatacagagaggaacagatacaaaGAGGAatagatacagagaggaacagatacagagaggaatagatacagagaggaacagatacaaaGAGGAatagatacagagaggaacagatacagcggaacagatacagagaggaacagatacagagaggaatagatacagagaggaatagaCACAGAAAGGAAAAGATAcggaggaacagatacagaggaacagatatagaggaacagatacagaggaacagatacagagaggaacagatacagagaggaacagatacagaggatcagatacagaggaacagatacagaggaacagatacagaggaacagatacagagaggaacagatacagagaggaacagatacagaggaacatatatagaggaacagatacagaaagggacagatacagagaggaatagacacagagaggaacagatacagagatgaacagatacagaggaacagatataGAGGTACAGATACAGAgtggaacagatacagagaggaacagatacagagaggaatagacacagagaggaacagatacagagatgaacagatacagaggaacatATATAGaggtacagatacagagaggaacagatacagagaggaacagatacagagatgaacagatacagagaggaacagatacagagaggaatagatacagagaggaatagacacagagaggaacagatacagagatgaacagatacagaggaacagatatagaggtacagatacagagaggaacagatacagagaggaacagatacagagaggaacagatacagaggaacagatacataggaacagatacagagaggaacagatacagaggaacagatacagaggaacagatatagaggaacagatacagaaaGGAACATATACAGAGAGGAATAggtacagagaggaacagatacagagaggaacagatacagagaggaatagatacagaggaacagatacagagaggaacagatacagaggaatagatacagagaggaacatatacagagaggaacagatacagaggaacagatacagagaggaacagatacagaggaacagatacagagaggaaacagatacagaggaatagatacagagaggaacatatacagagaggaacagatacagaggaacagatacgGAGAGGAACAgacacagaggaacagatacagaggaacagatacagagaggaacagatacagaggaacagatacagagaggaacagatacagagaggaacagatacataggaacagatacagagaggaacagatacagaggaacagatacagagaggaacagatacagaagtacagatacagaggaacagatacagagaggaacatatacagaggaacagatacagaggaacagatacagagaggaacagatacagaggaacagatacagaggaacagatacagaggaacagatacagagagggtcagatacagaggaacagatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU748078 lncRNA downstream 10838 84601010 ~ 84603645 (-) True G658076
TU748079 lncRNA downstream 12281 84601607 ~ 84602202 (-) True G658077
TU748028 lncRNA downstream 95835 84513483 ~ 84518648 (-) True G658036
TU747931 lncRNA downstream 327149 84286343 ~ 84287334 (-) True G657950
TU747926 lncRNA downstream 329243 84283551 ~ 84285240 (-) True G657949
TU748152 lncRNA upstream 128648 84747845 ~ 84752020 (-) False G658143
TU748153 lncRNA upstream 128648 84747845 ~ 84751862 (-) True G658143
TU748179 lncRNA upstream 178091 84797288 ~ 84799006 (-) True G658161
TU748185 lncRNA upstream 222130 84841327 ~ 84843812 (-) False G658162
TU748186 lncRNA upstream 222130 84841327 ~ 84843812 (-) False G658162
XM_036984246.1 mRNA downstream 281574 83954195 ~ 84332909 (-) False LOC110528632
XM_036984247.1 mRNA downstream 281574 83954195 ~ 84332909 (-) False LOC110528632
XM_036984244.1 mRNA downstream 697369 83913871 ~ 83917114 (-) True LOC110528630
XM_036984245.1 mRNA downstream 697405 83913871 ~ 83917078 (-) False LOC110528630
NM_001124197.1 mRNA downstream 709323 83902025 ~ 83905160 (-) True stl3
XM_036984249.1 mRNA upstream 225134 84844331 ~ 85106458 (-) False LOC110529055
XM_036984250.1 mRNA upstream 225134 84844331 ~ 85106458 (-) False LOC110529055
XM_036984248.1 mRNA upstream 225134 84844331 ~ 85106696 (-) True LOC110529055
XM_021610776.2 mRNA upstream 487774 85106971 ~ 85119900 (-) False LOC110528641
XM_036984251.1 mRNA upstream 487774 85106971 ~ 85119900 (-) False LOC110528641
TU747690 other downstream 657715 83954247 ~ 83956768 (-) True LOC110528632
TU746415 other downstream 998485 83608532 ~ 83615998 (-) True G656671
TU746032 other downstream 1286303 83327479 ~ 83328180 (-) True G656314
TU745346 other downstream 2281185 82328398 ~ 82333298 (-) False G655715
TU745266 other downstream 2387938 82225952 ~ 82226545 (-) True G655651
TU748303 other upstream 387529 85006726 ~ 85007505 (-) False G658255
TU748304 other upstream 387529 85006726 ~ 85007505 (-) False G658255
TU748305 other upstream 387529 85006726 ~ 85007505 (-) True G658255
TU749640 other upstream 1541045 86160242 ~ 86160923 (-) True G659250
TU750071 other upstream 2013210 86632407 ~ 86633856 (-) True G659543

Expression Profile