RNA id: TU748684


Basic Information

Item Value
RNA id TU748684
length 304
lncRNA type intronic
GC content 0.46
exon number 1
gene id G658553
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85693026 ~ 85693329 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccgcgacgtggctggttttccctgcagtccgtgattgtctgtagacgctgccacatacgtctcatgtctgagccgttgaattgcgtctTCATTTTGTATCTGTACTGATGTTTTGGCTATTTGATTGCCTTactgagggaataactacactgtttgtattcggccatattcccagtcacctcgccgtggttaaatgcggtggttcacactttcagttttgcgcgaatgctgccatatATCCACGGTTTTCCatgtttgggtaggttttaatagtcacagtgggaacaacatctcctatacactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU748658 lncRNA upstream 21746 85656759 ~ 85671280 (+) True G658534
TU748656 lncRNA upstream 38173 85654534 ~ 85654853 (+) True G658532
TU748599 lncRNA upstream 54731 85637327 ~ 85638295 (+) True G658481
TU748649 lncRNA upstream 68988 85623217 ~ 85624038 (+) True G658525
TU748629 lncRNA upstream 78049 85582067 ~ 85614977 (+) True G658505
TU748688 lncRNA downstream 2497 85695826 ~ 85696087 (+) True G658557
TU748692 lncRNA downstream 10655 85703984 ~ 85704347 (+) True G658561
TU748704 lncRNA downstream 32729 85726058 ~ 85726308 (+) True G658572
TU748707 lncRNA downstream 35125 85728454 ~ 85729104 (+) True G658573
TU748594 lncRNA downstream 52995 85746324 ~ 85747415 (+) True G658476
XM_036984266.1 mRNA upstream 44385 85630978 ~ 85648641 (+) True tamm41
XM_036984263.1 mRNA upstream 75095 85551793 ~ 85617931 (+) False pusl1
XM_036984265.1 mRNA upstream 75095 85551793 ~ 85617931 (+) False pusl1
XM_036984264.1 mRNA upstream 75517 85551793 ~ 85617509 (+) False pusl1
XM_036984259.1 mRNA upstream 329343 85301554 ~ 85363683 (+) True LOC110528636
XM_021610782.2 mRNA downstream 3207 85696536 ~ 85744794 (+) True vgll4b
XM_036984467.1 mRNA downstream 324746 86018075 ~ 86033561 (+) True LOC110528658
XM_036984269.1 mRNA downstream 408934 86102263 ~ 86296811 (+) False atp2b2
XR_005052685.1 mRNA downstream 408934 86102263 ~ 86296811 (+) False atp2b2
XM_036984272.1 mRNA downstream 408935 86102264 ~ 86301437 (+) False atp2b2
TU747353 other upstream 685528 85006479 ~ 85007498 (+) False G657481
TU747351 other upstream 685528 85006580 ~ 85007498 (+) True G657481
TU747111 other upstream 1074309 84612829 ~ 84618717 (+) False G657292
TU747113 other upstream 1074991 84614663 ~ 84618035 (+) False G657292
TU747071 other upstream 1138253 84551996 ~ 84554773 (+) True G657254
TU749085 other downstream 193263 85886592 ~ 85887121 (+) True G658885
TU749087 other downstream 202497 85895826 ~ 85896149 (+) True G658887
TU749391 other downstream 715373 86408702 ~ 86412585 (+) False G659058
TU749484 other downstream 827731 86521060 ~ 86521822 (+) True G659136
TU750287 other downstream 1407135 87100464 ~ 87102270 (+) True G659706

Expression Profile