RNA id: TU748745


Basic Information

Item Value
RNA id TU748745
length 365
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G658605
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85864179 ~ 85864543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCCACCCACCTTCTTTATCTAGACTCGGAGAGCAGGGCGCATTCAAGGTCTACACTCTACTTACGTTTTATTACATTATTGCTTCAGCAACTGTTTACGAAGAGGATTATACAGTATAATCACAGCCTTCGATATTCTGTTGAGATATCCTCTTCGTCAACAGTCGCTGACAGAACAACGTAACATTCTGTAAACATGTTAGGTCTATGTTATAATATCTCTTGGACCGTACAACTGGACACCAGTCTATAGTCTACCGTTGGGTTTAGCAGGACCAGAGCTAACTTCATAATCTCGAAACCACAGAGGATCCAGAGGAtcactgtattatactgtatctcacaagattatactgtattatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU748734 lncRNA upstream 39594 85824232 ~ 85824585 (+) True G658594
TU748719 lncRNA upstream 79033 85784688 ~ 85785146 (+) False G658583
TU748720 lncRNA upstream 79033 85784688 ~ 85785146 (+) False G658583
TU748721 lncRNA upstream 79033 85784688 ~ 85785146 (+) True G658583
TU748589 lncRNA upstream 107597 85755666 ~ 85756582 (+) True G658472
TU749076 lncRNA downstream 5952 85870495 ~ 85870971 (+) True G658878
TU749084 lncRNA downstream 11225 85875768 ~ 85875990 (+) True G658884
TU749088 lncRNA downstream 33558 85898101 ~ 85898316 (+) True G658888
TU749093 lncRNA downstream 73179 85937722 ~ 85939442 (+) True G658890
TU749110 lncRNA downstream 97042 85961585 ~ 85961887 (+) True G658902
XM_021610783.2 mRNA upstream 119385 85649845 ~ 85744794 (+) False vgll4b
XM_021610782.2 mRNA upstream 119385 85696536 ~ 85744794 (+) True vgll4b
XM_036984266.1 mRNA upstream 215538 85630978 ~ 85648641 (+) True tamm41
XM_036984263.1 mRNA upstream 246248 85551793 ~ 85617931 (+) False pusl1
XM_036984467.1 mRNA downstream 153532 86018075 ~ 86033561 (+) True LOC110528658
XM_036984269.1 mRNA downstream 237720 86102263 ~ 86296811 (+) False atp2b2
XR_005052685.1 mRNA downstream 237720 86102263 ~ 86296811 (+) False atp2b2
XM_036984272.1 mRNA downstream 237721 86102264 ~ 86301437 (+) False atp2b2
XM_036984273.1 mRNA downstream 237721 86102264 ~ 86301438 (+) False atp2b2
TU747353 other upstream 856681 85006479 ~ 85007498 (+) False G657481
TU747351 other upstream 856681 85006580 ~ 85007498 (+) True G657481
TU747111 other upstream 1245462 84612829 ~ 84618717 (+) False G657292
TU747113 other upstream 1246144 84614663 ~ 84618035 (+) False G657292
TU747071 other upstream 1309406 84551996 ~ 84554773 (+) True G657254
TU749085 other downstream 22049 85886592 ~ 85887121 (+) True G658885
TU749087 other downstream 31283 85895826 ~ 85896149 (+) True G658887
TU749391 other downstream 544159 86408702 ~ 86412585 (+) False G659058
TU749484 other downstream 656517 86521060 ~ 86521822 (+) True G659136
TU750287 other downstream 1235921 87100464 ~ 87102270 (+) True G659706

Expression Profile