RNA id: TU749526


Basic Information

Item Value
RNA id TU749526
length 391
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G659170
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 85947070 ~ 85947460 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttctatcagtttgtgctgttctgtgaagagagtagcgcacagcattgtacgagatcttcattttcttggcaatttctcacatggaataatagccttcatttctcagaacaagaatagaccgatgagtttcagaagaaagttctttgtttctggacattttgagcctgtaatcgaacccacaaatgctgatgctccagatacttaactagtctaaaggccagttttattgcttctttaatcaggacagcagttttcagctgtgctaacgtaatttcaaaaggggtttctaatgatcaattagcctttttaaaatgataaacttggattagctaacacaacgtgctattggaacacaggagtgatggtttctgataatgggcctctgtacgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU749522 lncRNA downstream 5309 85941342 ~ 85941761 (-) True G659166
TU749521 lncRNA downstream 5863 85940998 ~ 85941207 (-) True G659165
TU749518 lncRNA downstream 6696 85939678 ~ 85940374 (-) True G659163
TU749514 lncRNA downstream 6823 85939678 ~ 85940247 (-) False G659163
TU749530 lncRNA upstream 4143 85951603 ~ 85951856 (-) True G659174
TU749532 lncRNA upstream 5716 85953176 ~ 85953398 (-) True G659176
TU749547 lncRNA upstream 42833 85990293 ~ 85991766 (-) True G659189
TU749551 lncRNA upstream 49615 85997075 ~ 85997324 (-) True G659193
TU749552 lncRNA upstream 53939 86001399 ~ 86001631 (-) True G659194
XM_021610790.2 mRNA downstream 82521 85856689 ~ 85864549 (-) True hrh1
XM_021610789.2 mRNA downstream 84709 85856689 ~ 85862361 (-) False hrh1
XM_036984267.1 mRNA downstream 91218 85764638 ~ 85855852 (-) True atg7
XR_005052684.1 mRNA downstream 388738 85557907 ~ 85558332 (-) True LOC118965326
XM_036984262.1 mRNA downstream 395353 85401070 ~ 85551717 (-) True LOC110511195
XR_005052722.1 mRNA upstream 57388 86004848 ~ 86007056 (-) False LOC118965394
XR_005052723.1 mRNA upstream 57388 86004848 ~ 86007056 (-) False LOC118965394
XM_036984281.1 mRNA upstream 570034 86517494 ~ 86549674 (-) True slc6a1b
XM_021610792.2 mRNA upstream 738812 86686272 ~ 86704088 (-) True LOC110528661
XR_005052724.1 mRNA upstream 766819 86714279 ~ 86715176 (-) True LOC118965395
TU748303 other downstream 939565 85006726 ~ 85007505 (-) False G658255
TU748304 other downstream 939565 85006726 ~ 85007505 (-) False G658255
TU748305 other downstream 939565 85006726 ~ 85007505 (-) True G658255
TU747690 other downstream 1990302 83954247 ~ 83956768 (-) True LOC110528632
TU746415 other downstream 2331072 83608532 ~ 83615998 (-) True G656671
TU749640 other upstream 212782 86160242 ~ 86160923 (-) True G659250
TU750071 other upstream 684947 86632407 ~ 86633856 (-) True G659543
TU750481 other upstream 1056276 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 1337441 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 2305603 88253063 ~ 88259405 (-) True LOC110528687

Expression Profile