RNA id: TU749250


Basic Information

Item Value
RNA id TU749250
length 3333
lncRNA type antisense_over
GC content 0.34
exon number 3
gene id G658975
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86160291 ~ 86523925 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGTTCTTTATTTACTTCTGCAGATAACATATATGGCAATCATGCTTTTTTCATATAACACCATCTAACACCATGTATTATATATTGTACATAGAATATTTTACATTAGGCCCATGAGACTGGTAGAAATATACAAAACAAGATTCTTTGACTAGACAAGTGTATCTATCTATGATTTAATTATTctactattattgttattgccatctattattttttttttacatttcagaaagatataatataatatgagaTATATGTGCTTTAGGTTTCTGAAATAATCCTATTATTGCAGAAAACAGCAAATAATAGCAGATTTTTTTCAACATTTAGACAAAAAAAAACTCATCTGGACATTCACAGTTACATGTATAACGCAGTAGAGTTTTACAACATCATTTAAGACAGAAAACTGCAGTATGGTAACTTTATACAAAATTAATGGGAACCTTAATTCATTGCACATTTTAGTTTTATATTCTTTGCAGTGACTAAAATGACTCATTTAAACCAGATCCTTGTCATTTGTCGCTGCCATGGAAACAAACTAGTTTAATCTTTATAGAAATACAACTTTGATAATTTGTTTGGATTACTATATAATCGatctatatatgtatatgtatatatacagtactaatcGGTCttcacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagcacgtagaggtttgtaattttttttatcataggtacactacaattgtgagagacggaatctaaaacaaaaatccaggaaatcacattgaATGAATTTTaactaattaatttgcatttgccccactgtatatgtatatatacagtactaatcAACAGTTTGGACAAatctacacattcaagggtttttcttatttttactattttctacattgtagaataaaagtgaaggcagaaaaactatgaaataacacatatggaatcatgtagtaaccaaaaaagtgttaaacaaatatataagtcgccttggcattctctcaaccagtttcacctggaatgattttccaatcgtcttgaagttcccacatatgctgagcacttgttggcttcttttccttcactctgtggtccaactcctCCCAAATCATCTcagtttggttactacatgattccatatgtgttacttcatagttttgatgtcttcactattaatatacaatgtaaaaaattaagaaaaacctttgaatgagtaggtgtgtgcatATTTTTGATtgatactatatatatatttatttattgaaaAAAAACTTGATAATTAATGTTTCCTCTttcaaaaaaaatgaaaaagaaaaGTATAATTTCAGTAGTAATATTGGCCTATGTTTTCGGACCAGGATAGGTTGTGGTCCATCTATAACACTTCTCTTACAGAACCTGACATAGGAAACCTGCACAGTCAGACTAGGACTAGAATGATTGACTAACAACAGACGACTGGCTATCATCTCTGTAGTTTCATCAGATAATTTGGTCACTTTTCACGACTGTTCCTGAGGTCTGGACTAATGTGGGAAACAAGTTTGAAGTTTAAACAGTATCTCTGGATTGTTAGAAGGAATTGTCATGCAGTCACTGCTCAAATGCTACTTCTGTGATAATAATGCTTATAGTACTGTGTTATCTGGATTGACGGGATGGGAGGGATATATATGTCTCATGTCAATAGGTTGGTAatcttgtttttttattattgACATGTGTATGATTTTGGTCCATCTCACTCTTACATAGAACACATCCTACAAAatgattctttaaaaaaaaaaaagttattgttCTTTAGAAAACAAAGATACAATTGTAACAGTCTCTGGTATGATAATGTTAATCTGCATTTTGTAATAGTCATACCGAATGGGAAGCTTTGAGATCCACACTGGAACTTTGTGCTTTTCAAAGGAAAATAAGTAAAGGGGTAAAATAGTGGTAAAAATGGCCGGATCTTGGAAAACAGTGATAATATTATATACATAGATTATGGAGATTTGGCCTTTTCAGGTTGCACTATCCCATAATGGTCATTGCTTATAATTGGTCAATATTCAATTCCACTATGCATCTTTAATTTTGCATTCATTTCACTACTTTCTGTAACACATTCCATTCCTTTTtctatatttattttaaatacaaaCACATATGAATTATAATCTATATATAACCTTTTTacaataattgtatttttaatagaTTAATTTAAGTAAATATCTTAAATTAGCACAGTAGTGTTGAATCATATTGGGCCTCCGAATTTAAATTACAATTCAAATTACAGTAATTTTCTAGGTAATAATTTCAGAAAAGACTGTTTTGCATAAGAAATAGAACCGTTGCCAATAACATCATgcatgtcctgtaacatagcctttCTTCATTCTGATCTGGCTAGTTAATCTACCTTTCTTCATTCTGATCTGGCTAGTTAATCTACCTTTCTTCATTCTGATCTGGCTAGTTAATCTACTTTACCTTTCTTCATTCTGATCTTAATCTACCTTTCTTCTTTCTGTTTtactcctttttttttttttacaaaccaacaaaaataaaataaaaacatttttaaagaaaaaaaagaaaacaaaatagTAATCAGGTTGGTCACATGTTTCCCCTGGAGGTAGGTGATTAGATAGACATCGAAGTCATTTTTTTCATCTCAAATAGAACacttttccctatgtagtgcactactttagaccagggcccagagggaatagggttccatttgacaagggcccagagggaatagggtaccatttgaccagggcccatagggaatagggttccatttgaccagggcccagagggaatagggtaccatttgaccagggcccagagggaatagggttccatttgaccagggcccagaggaaatagggtaccatttgaccagggcccagggggaatagggtaccatttgaccagggcccagagggaatagggtaccatttgaccagggcccagaagGACTAATACCTATATGAAACACTATCTATATTGGCCCTGGTAAAAAGCAGTGTAACTACATAGGTAATTGTGTGCCATTTGAGACGAATCCCTTGGTTGCGTTTCACCTTGATTACGTTGTTTTCTGCAGAGAGTTTGCCCTCGAGGGTTTAGGATGTAGTAACAAGGTTTAGATGTAAGCCTCTTCAGTGGCCAGGTTCTCTGCTTCTGCTGCAGTCTGCTCAGGGCCGTTCTCCTGGCGTTCTCCTTTCACCATCATCGGGGGCTGGATCATTATCCGCAGACGCTGCAATGTGCGAGAGAACGAcacgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU749461 lncRNA upstream 50362 86462967 ~ 86463705 (+) True G659116
TU749445 lncRNA upstream 66415 86446785 ~ 86447652 (+) True G659102
TU749443 lncRNA upstream 74139 86439587 ~ 86439928 (+) True G659101
TU749361 lncRNA upstream 101093 86408702 ~ 86412974 (+) False G659058
TU749363 lncRNA upstream 101093 86408702 ~ 86412974 (+) False G659058
TU749501 lncRNA downstream 55874 86573817 ~ 86574024 (+) True G659150
TU749502 lncRNA downstream 56267 86574210 ~ 86574747 (+) True G659151
TU749503 lncRNA downstream 56856 86574799 ~ 86575893 (+) True G659152
TU749504 lncRNA downstream 62189 86580132 ~ 86581061 (+) True G659153
TU749506 lncRNA downstream 64432 86582375 ~ 86583535 (+) True G659155
XM_036984279.1 mRNA upstream 108038 86344725 ~ 86406029 (+) False slc6a11b
XM_036984278.1 mRNA upstream 108038 86345451 ~ 86406029 (+) True slc6a11b
XM_036984280.1 mRNA upstream 157430 86345416 ~ 86356637 (+) False slc6a11b
XM_036984271.1 mRNA upstream 208533 86102266 ~ 86305534 (+) False atp2b2
XM_036984285.1 mRNA downstream 467608 86985551 ~ 87004405 (+) False LOC110488455
XR_002468410.2 mRNA downstream 486973 87004916 ~ 87007309 (+) False LOC110488454
NM_001160529.1 mRNA downstream 536571 87054514 ~ 87056155 (+) True si:dkey-42i9.4
XM_036984287.1 mRNA downstream 548219 87066162 ~ 87106788 (+) True ippk
XM_036984290.1 mRNA downstream 598817 87116760 ~ 87156905 (+) False ecm2
TU749391 other upstream 101482 86408702 ~ 86412585 (+) False G659058
TU749087 other upstream 617918 85895826 ~ 85896149 (+) True G658887
TU749085 other upstream 626946 85886592 ~ 85887121 (+) True G658885
TU747353 other upstream 1506569 85006479 ~ 85007498 (+) False G657481
TU749484 other downstream 3117 86521060 ~ 86521822 (+) True G659136
TU750287 other downstream 582521 87100464 ~ 87102270 (+) True G659706
TU750444 other downstream 866956 87384899 ~ 87387283 (+) True nisch
TU751823 other downstream 1904821 88422764 ~ 88427927 (+) True G660790
TU751969 other downstream 2104370 88622313 ~ 88689342 (+) True G660853

Expression Profile