RNA id: TU749714


Basic Information

Item Value
RNA id TU749714
length 5317
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G659307
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86298347 ~ 86305528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTCTAGAAATTTATTTAGTGATTTTTTTCATTGTTAATTTATTTTTCACTTGCGCTTGCTCCTGTCTTGGGAGTTGTGGTAATGGACAGTTAAGCAGCAACAAGAGTCACAGTTCGTATAACGTTCGTCAAGCTAGAAAATAATttacaacacatttttttttttactgacttTTGAAACCACAAACATGGgacggggggtgggggggtgttaCAATCAGAAAGCATGACTTTTTGCATAGTATTAAATGAACAAAAGACATTGAGTTCTTTATTTACAATTATTGTATAGATAAAACAATTCATAAAAACAAGATGTAGGATGCCGGGAAAGAAACGTATCATTTATACCCATCAAATCGGCTAGAATGCCACATTCCACGTTGGCATTTTGACGATTTCTTTGCTCCACAAAATGGCATGCTGCTAGGTAAAGTACACAGAGGCAGGTGACCTATTGCAAGAAGTGTCCTCCTTATTaggatcattattattatttataacaTTAGTTGGATGAGTTTAGTGAAGCGTGTGTATGTTGACATGATGAACAGACTGAGGTCTGAGCCCGTATTCAGAGTAGGattgctggtctaggatcaggtacccccccccccccccatttttctATAATAATCTTATTCACTATTATCTAAAAAAggtcaaactgatcctagatcagaactcctacTGTGATAAACATTATGAATACAGGGCCTGGTGGTCTGGTTGAGACTAGAATGACTCAGGGAccatattcacaaagtgtctcagaataGGAGATGTAATCTAGTATccgtttgagggggggggggggggctgatcctAGACCTGAGTTGCTTTGTGAATACGGGGGCCCCTGATCAGTAATGAATTCTGCTATGGAGGAATTGCTTAGAGTACAAGCAGAGTTTAGTAAAGTACAGCCCACTAGCCTGGACGGATGGACCGTTGTGTGTATGTCCTCTTAGAAGACATTCCTCTTAGAAGACATTCCTCTTAGAAGACATTCCTCTTAGAAGACATTCCTCTTAGAAGTAATGTACATGGAACACACTGTTGCATCCCCTTAAAGCTGAACGTATAGCTTGAATGTATAGATGtgatgttaaaaaataaaaaataaaatgttggcTGAAAATCttttgatgtaaaaaaaataataataatgttttacccgaaggagaaaaaaaaatacaaaaaagaaaAATCAAGCGGTTTTAAAAGCAACTGCAGAAGTCAAGACCATTTCTGAATGAAAATAGAGctgtttcaacaacaacaacaacaacaacaacaagtcctTAGCTTGTTCAACAGGCCTGAGCTAAGCGTTGAGAGCTTGTGCACCCTCTCCTAATCCGACGGCAGAATTGGTTTAATAAAAGAGAAATCAGGTCAACGCATAATTACCACGGGATTCATTTAGAACGATTGGGATTGGTTCAACTTGCATATTGAGCATATTACATCATGCTTTTCCATGACTCCAATTGGTTGTAGGAATATTACAATAACACAAGAGTGTGTGCTATGAACGCCTCTGTGCCTTTTGATATATAGTAAGTTAAGTGTGGCTTCTTTTGTAATCTCCCACatccttttttaaattttttttttaaagcacaatAAATAGTTCTAACAACTAAGTGAATAGTGTTGAGATGCTAGAGTTGACTCGGTGAAGGCAGGAAGACAAGCTTGGTTAAAACACCACAGAAACACATCTAAAAGCACACCAAAAAGGGGTTTCATTCATATCCTGATAGTGAGGAAATTTCttcttttttaaaaaatgtttttgttgttgtttataacGAGTTGAagcatcattattattattattatttttttttttttgtcgttCAAAATGCCAATAACTTTGGATCTCCGTGtggttttttttttcttattatttttcaaaaggaaaacaagaaatcaataaaataataaaacaatcaATCAACACATTATTTCACAAGATTTTCAACACAACTTTTAGATTTTTCTATACAGATAAAACAAATATAGTTTGCAATTTCTAATATAAATCCATCGCAGCCTTTGATGGTCACACAAAATAAAATTTTGAAATCCTTAAAACTAGACGTTTTTATATAGGAGACATGTCCGTTATAGAAGGCCTGTTCGGCCGCTCAGCTCAGAGTAAGTCTCCATTTAAGTTACATTTCAAGCTTTGaacaaaaaataagaaaaataagaaaaattgTAATCAAAGAAATAAAACCTTTAGTCTTATTAACATCTCTGTTTGGAAACAAAGGTTCAAAGTTCATCCCAACAATCATATAATATTAGCTAACATGAATTATTACATCCCATAATATTTTGGTTTTCTTTTGTTATCCTCTAAAAAAATATCTACAGTATTTGATAGCAGGCAAGTCCAGTACACGGTATATTATAAACACCAATGAGGAGAACTCAAACAACTTGAGTTTTTTTTTTCCAACTACATCTGCTGAATGGTTTGGAACCCTACGAATCAACCAGGACGTTTCTACGGGTGTTGTAAACCAATGACATTCTCTTAAAGCACATAAATAAGTTAAAAGTAGTTCGAGCCATCGAAGCAGAAACAAGGCAACATGCCAACAAATGAAGATAaactctgtgtgtatatatatatatatatatatatttatatatcatAAGTTTAagaaatgttatttatttatggGTTCCTCTTTTCCAACAGGTGTAAATCTACTGTGCTTGTTGAGTCCTACGGCCTTGACACACGTCTCATTTTTATAaaccaaatacatttttacactTAAAGAACTCGCAGACCAACGATCGGATAAAGCTGCCTTAAAGAAGCAATCCCCTTCTCACCCACCCAATCAAATTAAAAACAActatttaaataaaaacattggaTAATGTACATTCATGCAGGAGcaataataaatgtttttaatTGAATCTATTAGGAGAAACAGTCATTGTTAATGTGAGGACGGAGAGAGGAGTGGGTTGTAGTTTATGCTGTTTTTTCCACTCACTTTCTGGTCCTCCTCTTCACTGCTGCTAGAAACATGGTTCAGTCAGTCAgcagcgcgcgcacacacacacacacacacacacacacacacacatacagtacacacacatgtcCTGTGTGTTGGCTTTGTTGTGCTTTCTGATTGTATGTGTGGTATGATGTTTTCTCCAGGTACAGGAGGAGAGATTGCAGGAGACAGACTGAGGCTAGAGGAAGGTCTCCAAACTGCAGACAAAAGGAGGTATCCAAGAGACTGAAAGACAGAAGTCTCCAACCTGCAGTGTGGGAGCCAccaggctgcagtagatatctccaCCAGGCCTCAAGAGAAAGCTCTCTATATTGCAGTAGAGAAAGCTCTCTATATTGCTGTAGAGAAAGGTCTCTATATTGCAGTAGAGAAAGCTCTCTATATTGCTGTAGAGAAAGGTCTCTATATTGCAGTAGAGAAAGGTCTCTATATTGCAGTACAGAAAGGTCTCTATATTGCAGTAGAGAAAGGTCTCTATATTGCAGTAGAGAAAGCTCTCTATATTGCAATAGAGAAAGGTCTCTATATTGCAATAGAGAAAGGTCTCTATATTGCAGTAGAGAAGGGTCTCTATGTTGCAGTAGGGAAAGGTCTCCAAATGGCAGTGAAGGAGGTCTCCAGATTGCAGACGGAGGTCTCCACCAGCCAGGCTATCAGAAGGTGTTGCTAGAGGTCTCCAAGGGCTGCAGTGGGCTGGTGTCTCCAAGGTTGCAGATGAGGTCTCCACCAGCCAGCTGCAGGCCACTAGAGGGAGGTCTCCAGACTGTGCAGTGGGCTGGCTGGGCCGGAGGATGCAGCTGATTTACTGGTGGTGTCGATGGTGAGGTTGATGCCGCTGTCAACGGCGTTGTTGTTCTTGTTGGGGGACTGGGGCTGGCTGCCTGTCTGGGACTGAGGGATCATCCTCAACGCAGGGTCCTCTTCCAGGTCAGTGTCGTCTATCAGGGGGATGTGAGGCGTGGTGTCTTCTATCCTAAACTCTGGGTGGGTCATGAAGTTATGGATGGACGGTCTAGAGTCTGGTTTCTCAAGGCCTTCGTAGAGGGAGCTACGGAATGCATTCACGACGCGAATCtgtggtagggagggagagaagagggagggagggagggggggggggggggagtaaacACAGGAGAGCAAATAAGAACCGTCAGGAAGGATTGACTCTGGGAGAGGTAGAGAATCCTCTGAGAGATGGTCAGATAAAGACAGAGGGGGTTaggtaggaggaagaggaggaggaggaggaagaggaaactgCAGTCTGTGGTCTGctttcacagtacagtacagtataatacggTACAGTAcgatataatacagtataatacagtacaacaTGGTACACAACTCACTGATCTGACGCGCACCTAAACAGAAGGTCATAGGCAAAACACAAGATTAAGGTAACACTCATTGTATGTATATAACAGGACCCAATGTGTGATATACCTATAGAGATAAGACACAATATACCTATTGAGGTTATACCTATAGAGATAAGACACGTTTTACCCATAGAGATAAGACACGTTTTACCCATGGAGATAAGACACAATGTACCTGTAGAGATAAGACACGTTATAACTATAGAGATAAGGCCGGTACACCTATAGATATAAGAAATGATATACCTCTTGAGATAAGACACAATATACCTCGAGATAGGACACGATATACCTATAGAGATAAGAAACTATATACCTATTGAGACAAGTCACGTTATACCTATAGAAATAAGACACAATATACCTAAGACACGATATACCTAAGACACGATATACCTATAGGGATTAGACACGATATACCTAAGAAACGTTATACCCATAGAGAAAAGTCATGTTATACCTATAGAGTTAAGACACTATATACTTCTTGAGATCAGACACGCTATACCTATAGAGATAAGACACAATATACCTACGACAATATACACCTATAGAGCCAAGTCACGTTATACCTCTAGCGATAAGTCACGTTATACCTATAGAGATAAGACACAATATAACTATAGAGATAAGACACGTTATACCAATAGAGTTAAGACACATTATACCTACAGAGATAAGACACGTTATACCTAGAGATAAGACACGTTATACCTAGAGATAAGACACGTTATACCTAGAGATAAGACACGTTATACCTAGAGATAAGACACGTTATACCTAGAGATAAGACACGTTATACCTAGAGATAAGACACGTTATACCTAGAGATAAGACACGTTATACCTAGAGATAAGACACGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU749717 lncRNA downstream 4220 86294173 ~ 86295944 (-) True G659308
TU749703 lncRNA downstream 12675 86285433 ~ 86287489 (-) True G659304
TU749684 lncRNA downstream 39418 86259885 ~ 86260746 (-) True G659291
TU749519 lncRNA downstream 42573 86256874 ~ 86257591 (-) True G659164
TU749680 lncRNA downstream 50986 86248092 ~ 86249178 (-) True G659287
TU749746 lncRNA upstream 36032 86341560 ~ 86342032 (-) False G659327
TU749749 lncRNA upstream 36032 86341560 ~ 86342032 (-) True G659327
TU749754 lncRNA upstream 41267 86346795 ~ 86348080 (-) True G659330
TU749758 lncRNA upstream 45897 86351425 ~ 86352594 (-) True G659332
TU749783 lncRNA upstream 79843 86385371 ~ 86385962 (-) False G659346
XR_005052722.1 mRNA downstream 293108 86004848 ~ 86007056 (-) False LOC118965394
XR_005052723.1 mRNA downstream 293108 86004848 ~ 86007056 (-) False LOC118965394
XM_021610790.2 mRNA downstream 435615 85856689 ~ 85864549 (-) True hrh1
XM_021610789.2 mRNA downstream 437803 85856689 ~ 85862361 (-) False hrh1
XM_036984267.1 mRNA downstream 444312 85764638 ~ 85855852 (-) True atg7
XM_036984281.1 mRNA upstream 211966 86517494 ~ 86549674 (-) True slc6a1b
XM_021610792.2 mRNA upstream 380744 86686272 ~ 86704088 (-) True LOC110528661
XR_005052724.1 mRNA upstream 408751 86714279 ~ 86715176 (-) True LOC118965395
XM_036984282.1 mRNA upstream 418240 86723768 ~ 86820513 (-) False poc1a
XM_036984283.1 mRNA upstream 639269 86944797 ~ 86966992 (-) False LOC110528663
TU749640 other downstream 139241 86160242 ~ 86160923 (-) True G659250
TU748303 other downstream 1292659 85006726 ~ 85007505 (-) False G658255
TU748304 other downstream 1292659 85006726 ~ 85007505 (-) False G658255
TU748305 other downstream 1292659 85006726 ~ 85007505 (-) True G658255
TU747690 other downstream 2343396 83954247 ~ 83956768 (-) True LOC110528632
TU750071 other upstream 326879 86632407 ~ 86633856 (-) True G659543
TU750481 other upstream 698208 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 979373 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 1947535 88253063 ~ 88259405 (-) True LOC110528687
TU752275 other upstream 2453965 88759493 ~ 88759938 (-) True G661128

Expression Profile