RNA id: TU750098


Basic Information

Item Value
RNA id TU750098
length 1830
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G659553
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86663528 ~ 86666153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGATGTCATTCATGAGGCAGAACATGACTGTGGAATCTCGTGGAATCCAGACAGGAGTTGAGGGAGACCGAAGAAGTGACTGAGTAATTGGTGAGGAGAGAGACGAAGTGAATGAATAAAGTCTTTGGTGACAATCAGCTTTGAAATCAGCAGAGTACTCGGGTAGTGAATTCATCTGTCGGCTAGCAAGGAAAGTTAGCCTAAAAAGCTGGAAGCTACCGGTATCTtcatcaaattcaaatcaaagtttatttgtcatgtgtgcCGAATTCAAcattaccttacagtgaaatgcttacttacaggctctaaccaataatgcaaaaaaaggtattaggtgaacaataggtaagtaaaacaacagtaaacatcaaaacaacagtaaaaagacaggctatatacagtagagaggctatatacagtagagagactatatacagtagaggggctctatacagtagaggctatatacagtagagaggctatatacagtagagaggctacatacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagagaggttatatacagtagagaggctatatacagtagagagactatatacagtagaggctatatacagtagagtggctatatacagtagagagactatatacagtagaggctatatacagtagagtggctatatacagtagagagactatatacagtagaggggctctatacagtagaggctatatacagtagagaggctacatacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagagaggttatatacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagaggctatatacagtagagaggctacacacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagagagactatatacagtagagagactatatacagtagagaggctatatacagtagagaggctttatacagtagagaggctatatacagtagagaggctatatacagtagagagactatatacagtagagagactatatacagtagagaggctatatacagtagaggctatatacagtagagaggttatatacagtagtgaggttatatacagtagagaggctttatacagtagagaggctatatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagaggttatttacagtagagaggctatatacagtagagtggctatctacagtagagaggctatatacagtagagaggctatatatagtagagaggctatttacagtagagaggctatatacagtagaggttatatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagcgaggctacatacagacaccggtttgTCAGCCtgattgagatagtatgtacatgtagatatggttaaagtgactatgcatatatgatgaacagattTCCTGTCATCAACCTCTTGCCTGATATCCGGGACTAGGTtattagccttttccctgcctgtactgttaccttGTTGGagtccctgtgtatgaccttctgcctgcccctggacccagctacctgcccctggacccagctacctacctcctcctgtgtatgacctcctgcctgccgctggacccagctacctgcccctggacccagctacctgcctcctcctgtgtatgaccttcagcctgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU749926 lncRNA downstream 65525 86597677 ~ 86598003 (-) True G659423
TU749924 lncRNA downstream 69799 86593435 ~ 86593729 (-) True G659421
TU749920 lncRNA downstream 76470 86586589 ~ 86587058 (-) False G659419
TU749922 lncRNA downstream 76470 86586589 ~ 86587058 (-) True G659419
TU749912 lncRNA downstream 117479 86545707 ~ 86546049 (-) True G659412
TU750103 lncRNA upstream 8488 86674641 ~ 86679930 (-) True G659558
TU750057 lncRNA upstream 9308 86675461 ~ 86681451 (-) False G659532
TU750058 lncRNA upstream 9308 86675461 ~ 86681451 (-) True G659532
TU750062 lncRNA upstream 10237 86676390 ~ 86682094 (-) True G659536
TU750060 lncRNA upstream 10708 86676861 ~ 86684069 (-) True G659534
XM_036984281.1 mRNA downstream 113854 86517494 ~ 86549674 (-) True slc6a1b
XR_005052722.1 mRNA downstream 656472 86004848 ~ 86007056 (-) False LOC118965394
XR_005052723.1 mRNA downstream 656472 86004848 ~ 86007056 (-) False LOC118965394
XM_021610790.2 mRNA downstream 798979 85856689 ~ 85864549 (-) True hrh1
XM_021610789.2 mRNA downstream 801167 85856689 ~ 85862361 (-) False hrh1
XM_021610792.2 mRNA upstream 20119 86686272 ~ 86704088 (-) True LOC110528661
XR_005052724.1 mRNA upstream 48126 86714279 ~ 86715176 (-) True LOC118965395
XM_036984282.1 mRNA upstream 57615 86723768 ~ 86820513 (-) False poc1a
XM_036984283.1 mRNA upstream 278644 86944797 ~ 86966992 (-) False LOC110528663
XM_036984284.1 mRNA upstream 278644 86944797 ~ 86966992 (-) True LOC110528663
TU750071 other downstream 29672 86632407 ~ 86633856 (-) True G659543
TU749640 other downstream 502605 86160242 ~ 86160923 (-) True G659250
TU748303 other downstream 1656023 85006726 ~ 85007505 (-) False G658255
TU750481 other upstream 337583 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 618748 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 1586910 88253063 ~ 88259405 (-) True LOC110528687
TU752275 other upstream 2093340 88759493 ~ 88759938 (-) True G661128
TU752665 other upstream 2386923 89053076 ~ 89061481 (-) True G661426

Expression Profile