RNA id: TU749961


Basic Information

Item Value
RNA id TU749961
length 1660
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G659450
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86676448 ~ 86683269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaggtttccttcttttcactctgtcatttaggttagtattgtggagtaactacaatcttGTTGATccctcctcagttttctcctatcacagccatttaaactctataaactgttttaaagtcaccattggcctcatggtgaaatctctgagcagtttccttcctctccggcaactgagttaggaaggacgcccgtatctttgtggtgactgggtgtattgatacaccatccaaagtgtaattaataacttcaccatgctcaaagggatattcaatgtctgcagtAGGTGCCCTTCTctctaattccactttgacattattgtgggtaggccagtgacacaatcttaatttaataaaatgttaaattcaggccgcaacacaacaaaatgtggaaaaagtcaaggggtgtgaatactttgtgaaggcactgtaaacatTCACTTCCGTTCTTCTCCTCTTTTCCCTggcctctctcactccctccatctcacgGATCCAACACACTCTTAGGTCTATgccccaaattgcaccctattccatatatattgCACAAATTTTGACCTGTTTGAaacttggtctaaagtagtgcactatatatagggaatagggtgcaatttgggacgcatgCTTATTTAACAGGAAGAAGCTACAATAAAATGtcacaacaaaaaatacaaatattcttgTGTTTTGTCAAATATACAAACAGAGAAAAACACTCATTAACACATGAAGCAGCTTGAAATCAACAATTTTCtcttaaaaaaaacaatttaaaaaaacttCGGCACTGAAATAAATTTCAACCCTAGGGTGTAACGTAcctctgtgtcccaaattgcaccctattccctatatagtgcactactttagaccagagccctatggcaccctattccctacatagtgcactactttagaccagagccctatggcaccctattccatacatagtgcactactttagaccagagccctatggcaccttattccctacatagtgcactactttagaccagagccctatggcaccctattccctacataatgcactattttagaccagagccctatggcaccctattccctacataatgcactattttagaccagagccctatggaggcATCGTCAAGAAGTAGCGCACTATAAAGTGTGCGATTTGGGACGACGTGTGATCGACTTGTCCACATTTCCTTATGGTTGTGACTGGGTTCAGACTCCAAACTGATAAAGTCCTATCGagcatatgtaaaaaaaaaaaaaaaaaaactcattaTCATCTGGAATAATGCTATATATTATATTTCGGAGAAACAACTTTGCATATCGGCTTTAAGATATAATATATTGAAAGGCCACAGGAATTAGACAGATAGGATAGAGCACATTATCAAAAACAAAACTAAAATCACTgaagaagaaaagaaaagtcatTTGGATTTTAACGAGCTACGACAGATCCAGAATTACACTCAGATATAAGTGCAGGGTTTGTCTCCTGGCTCTGTAGCCTAGTCCCAGATATGTCCGTGTTATCGTTCCACTCCAATGGCTAAACATAGGACACGAGAGGataaggagtggaatgttagcacaaacagactggctccGCGGGCTAGGTGTTGAGACGCAGCAAACAAACTGCTGTTATTAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU749510 lncRNA upstream 87979 86588263 ~ 86588469 (+) True G659159
TU749508 lncRNA upstream 89294 86586611 ~ 86587154 (+) True G659157
TU749506 lncRNA upstream 92913 86582375 ~ 86583535 (+) True G659155
TU749504 lncRNA upstream 95387 86580132 ~ 86581061 (+) True G659153
TU749503 lncRNA upstream 100555 86574799 ~ 86575893 (+) True G659152
TU749966 lncRNA downstream 1822 86685091 ~ 86686391 (+) True G659451
TU750017 lncRNA downstream 79889 86763158 ~ 86765882 (+) True G659498
TU750177 lncRNA downstream 242824 86926093 ~ 86926300 (+) True G659623
TU750188 lncRNA downstream 244623 86927892 ~ 87007275 (+) False LOC110488454
TU750205 lncRNA downstream 261529 86944798 ~ 86945295 (+) False G659640
XM_036984279.1 mRNA upstream 270419 86344725 ~ 86406029 (+) False slc6a11b
XM_036984278.1 mRNA upstream 270419 86345451 ~ 86406029 (+) True slc6a11b
XM_036984280.1 mRNA upstream 319811 86345416 ~ 86356637 (+) False slc6a11b
XM_036984271.1 mRNA upstream 370914 86102266 ~ 86305534 (+) False atp2b2
XM_036984285.1 mRNA downstream 302282 86985551 ~ 87004405 (+) False LOC110488455
XR_002468410.2 mRNA downstream 321647 87004916 ~ 87007309 (+) False LOC110488454
NM_001160529.1 mRNA downstream 371245 87054514 ~ 87056155 (+) True si:dkey-42i9.4
XM_036984287.1 mRNA downstream 382893 87066162 ~ 87106788 (+) True ippk
XM_036984290.1 mRNA downstream 433491 87116760 ~ 87156905 (+) False ecm2
TU749484 other upstream 154626 86521060 ~ 86521822 (+) True G659136
TU749391 other upstream 263863 86408702 ~ 86412585 (+) False G659058
TU749087 other upstream 780299 85895826 ~ 85896149 (+) True G658887
TU749085 other upstream 789327 85886592 ~ 85887121 (+) True G658885
TU747351 other upstream 1668950 85006580 ~ 85007498 (+) True G657481
TU750287 other downstream 417195 87100464 ~ 87102270 (+) True G659706
TU750444 other downstream 701630 87384899 ~ 87387283 (+) True nisch
TU751823 other downstream 1739495 88422764 ~ 88427927 (+) True G660790
TU751969 other downstream 1939044 88622313 ~ 88689342 (+) True G660853
TU752005 other downstream 2008625 88691894 ~ 88694076 (+) False G660886

Expression Profile