RNA id: TU750060


Basic Information

Item Value
RNA id TU750060
length 2081
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G659534
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86676861 ~ 86684069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTCTGTTTTtcaccataataataataataattctagaATTAGAGTTCGACACGTAAATACAGAATACAGCTGTATCGCTGACTGCTTAGATTTGTATTTTCTTTGTCGGGTGAATTTGCCCCTAAATACTGATCACGGGTCAGTTTAGCAATTTCTCCACTaatgtttaaggttaggatttggaTAGGGAAGGCTGATTCTAGACCTGTACCTAGGGGAAAAGTTACCCACGGAGCGCTCTGCTTTGGGACTGAAGCTCCCTTTCCTTCGTCTGGGGTGTCCAAAGTACAGGGGCTTCATTTGGTTTGCTAGCCTGGGTCCCACATCTGTGCGTTATCTCGCCAGTGTAACAGAGTGAGCCTCGTAAACATTACTCTCCAGCTGAGGCCGTGTGAGGAAGAAATCTATACCGTTAGGCGAGCACAGGGAAGCCTGTTACACCAACTCCATTGTCAAGCCAGACACATGTGTTTCCTACAAAGCAAAAAACAGACCGGCACCCAGGCTAATACGGTGATAGGTAGCCTTGCagtaagagcgttgggccagtaaccgaaaggtcgttGGTTCACCCTGTCGGCTTAGGGGTTTGAAccatctgtcgatgtgcccttgagcacaTTACTCCTAATGGCTCCAGGGTCGTCGCTGTTAATattggcagaccctggccgtgaccccactctctggggttgtctcagggagagttgggatatgcaaaaaaaaaaaaaaagttttttttaaaattaaattcaCACATGCCTATTAATACACATGTGAAACAAGACTCTAAGCTCTTCTTAATAACAGCAGTTTGTTTGCTGCGTCTCAACACCTAGCCCGCggagccagtctgtttgtgctaacattccactccttatCCTCTCGTGTCCTATGTTTAGCCATTGGAGTGGAACGATAACACGGACATATCTGGGACTAGGCTACAGAGCCAGGAGACAAACCCTGCACTTATATCTGAGTGTAATTCTGGATCTGTCGTAGCTCGTTAAAATCCAAatgacttttcttttcttcttcAGTGATTTTAGTTTTGTTTTTGATAATGTGCTCTATCCTATCTGTCTAATTCCTGTGGCCTTTCAATATATTATATCTTAAAGCCGATATGCAAAGTTGTTTCTCCGAAATATAATATATAGCATTATTCCAGATGAtaatgagtttttttttttttttttttacatatgctCGATAGGACTTTATCAGTTTGGAGTCTGAACCCAGTCACAACCATAAGGAAATGTGGACAAGTCGATCACACGTCGTCCCAAATCGCACACTTTATAGTGCGCTACTTCTTGACGATgcctccatagggctctggtctaaaatagtgcattatgtagggaatagggtgccatagggctctggtctaaaatagtgcattatgtagggaatagggtgccatagggctctggtctaaagtagtgcactatgtagggaataaggtgccatagggctctggtctaaagtagtgcactatgtatggaatagggtgccatagggctctggtctaaagtagtgcactatgtagggaatagggtgccatagggctctggtctaaagtagtgcactatgtagggaatagggctctggtctaaagtactgcactatatagggaatagggtgcaatttgggacacagaggTACCCTAGGGTTGAAATTTATTTCAGTGCCGaagtttttttaaattgttttttttaagaGAAAATTGTTGATTTCAAGCTGCTTCATGTGTTAATGACTAAGTGTTTTTCTCTGTTTGTATATTTGACAAAACAcaagaatatttgtattttttgttgtgaCATTTTATTGTAGCTTCTTCCTGTTAACTAAGcatgcgtcccaaattgcaccctattccctatatatagtgcactactttagaccaagttTCAAACAGGTCAAAATTTGTGcaatatatatggaatagggtgcaatttggggcATAGACCTAAGAGTGTGTTGGATCcgtgagatggagggagtgagagaggccAGGGAAAAGAGGAGAAGAACGGAAGTGAatgtttacagtgccttcacaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750093 lncRNA downstream 10708 86663528 ~ 86666153 (-) False G659553
TU750098 lncRNA downstream 10708 86663528 ~ 86666153 (-) True G659553
TU749926 lncRNA downstream 78858 86597677 ~ 86598003 (-) True G659423
TU749924 lncRNA downstream 83132 86593435 ~ 86593729 (-) True G659421
TU749922 lncRNA downstream 89803 86586589 ~ 86587058 (-) True G659419
TU750114 lncRNA upstream 21265 86705334 ~ 86767759 (-) True G659567
TU750124 lncRNA upstream 39938 86724007 ~ 86754816 (-) True poc1a
TU750168 lncRNA upstream 148662 86832731 ~ 86833402 (-) True G659614
TU750173 lncRNA upstream 203957 86888026 ~ 86888512 (-) True G659619
TU750485 lncRNA upstream 244189 86928258 ~ 87009364 (-) True G659827
XM_036984281.1 mRNA downstream 127187 86517494 ~ 86549674 (-) True slc6a1b
XR_005052722.1 mRNA downstream 669805 86004848 ~ 86007056 (-) False LOC118965394
XR_005052723.1 mRNA downstream 669805 86004848 ~ 86007056 (-) False LOC118965394
XM_021610790.2 mRNA downstream 812312 85856689 ~ 85864549 (-) True hrh1
XM_021610789.2 mRNA downstream 814500 85856689 ~ 85862361 (-) False hrh1
XM_021610792.2 mRNA upstream 2203 86686272 ~ 86704088 (-) True LOC110528661
XR_005052724.1 mRNA upstream 30210 86714279 ~ 86715176 (-) True LOC118965395
XM_036984282.1 mRNA upstream 39699 86723768 ~ 86820513 (-) False poc1a
XM_036984283.1 mRNA upstream 260728 86944797 ~ 86966992 (-) False LOC110528663
XM_036984284.1 mRNA upstream 260728 86944797 ~ 86966992 (-) True LOC110528663
TU750071 other downstream 43005 86632407 ~ 86633856 (-) True G659543
TU749640 other downstream 515938 86160242 ~ 86160923 (-) True G659250
TU748303 other downstream 1669356 85006726 ~ 85007505 (-) False G658255
TU750481 other upstream 319667 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 600832 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 1568994 88253063 ~ 88259405 (-) True LOC110528687
TU752275 other upstream 2075424 88759493 ~ 88759938 (-) True G661128
TU752665 other upstream 2369007 89053076 ~ 89061481 (-) True G661426

Expression Profile