RNA id: TU750173


Basic Information

Item Value
RNA id TU750173
length 487
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G659619
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86888026 ~ 86888512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccccatagagctctggttagaggaagtgttccctagggcccatagagctcttgttagagggagtgttccctaggcctcatagagctctggttagagggagtgttccctaggacccatagagctctgcttagagggagtgttccctaggccccatagagctttgcttagagggagtgttccctaggccccatagagctctggttagaggaagtgttccctagagcccatagagctctggttagagggagtgttccctaggcctcatagagctctggttagagggagtgttccctaggacccatagagctctgcttagagggagtgttccctaggacccatagagctctgcttagagggagtgttccctaggacccatagagctctggttaaatctagtgttccctaggtcccatagagctctggttagagggagtgttccctagaacccatagagctctgcttagagggagtgttccctaggcccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750168 lncRNA downstream 54624 86832731 ~ 86833402 (-) True G659614
TU750114 lncRNA downstream 120267 86705334 ~ 86767759 (-) True G659567
TU750124 lncRNA downstream 133210 86724007 ~ 86754816 (-) True poc1a
TU750060 lncRNA downstream 203957 86676861 ~ 86684069 (-) True G659534
TU750062 lncRNA downstream 205932 86676390 ~ 86682094 (-) True G659536
TU750485 lncRNA upstream 39746 86928258 ~ 87009364 (-) True G659827
TU750500 lncRNA upstream 53310 86941822 ~ 86944512 (-) True G659841
TU750505 lncRNA upstream 57958 86946470 ~ 86947219 (-) True G659846
TU750541 lncRNA upstream 144290 87032802 ~ 87033655 (-) True G659881
TU750574 lncRNA upstream 209363 87097875 ~ 87102123 (-) False G659907
XM_036984282.1 mRNA downstream 67513 86723768 ~ 86820513 (-) False poc1a
XR_005052724.1 mRNA downstream 172850 86714279 ~ 86715176 (-) True LOC118965395
XM_021610792.2 mRNA downstream 183938 86686272 ~ 86704088 (-) True LOC110528661
XM_036984281.1 mRNA downstream 338352 86517494 ~ 86549674 (-) True slc6a1b
XR_005052723.1 mRNA downstream 880970 86004848 ~ 86007056 (-) False LOC118965394
XM_036984283.1 mRNA upstream 56285 86944797 ~ 86966992 (-) False LOC110528663
XM_036984284.1 mRNA upstream 56285 86944797 ~ 86966992 (-) True LOC110528663
XM_036984286.1 mRNA upstream 118926 87007438 ~ 87053874 (-) True atrip
XR_005052725.1 mRNA upstream 169756 87058268 ~ 87059864 (-) True LOC118965396
XM_021610799.2 mRNA upstream 225592 87114104 ~ 87293964 (-) False LOC110528667
TU750071 other downstream 254170 86632407 ~ 86633856 (-) True G659543
TU749640 other downstream 727103 86160242 ~ 86160923 (-) True G659250
TU748303 other downstream 1880521 85006726 ~ 85007505 (-) False G658255
TU750481 other upstream 115224 87003736 ~ 87007292 (-) True G659824
TU750588 other upstream 396389 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 1364551 88253063 ~ 88259405 (-) True LOC110528687
TU752275 other upstream 1870981 88759493 ~ 88759938 (-) True G661128
TU752665 other upstream 2164564 89053076 ~ 89061481 (-) True G661426

Expression Profile