RNA id: TU750211


Basic Information

Item Value
RNA id TU750211
length 1861
lncRNA type antisense_over
GC content 0.56
exon number 9
gene id G659640
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86944798 ~ 86967074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTGATTCTCACCCTGACAGGGATGATGTGCGAGGGACAGTGGACGACGGGCAGTCCGGAGTCCATGAGCATCTGTCTCAGCAGCTTGACGTTGCGCTGGTGTTTCCGCCGGAGGGCGCGACCCTCCTCCCCTTTAAGGGTCTGGATGGACTCGCGGGCGCCCGCCAGCAGCATGGGAGGCAGAGACGTGGTGAATATGAAGCCGGCAGCGTAACTACGCACCGTGTCCACCAGGGCGTCGGTACTGGCGATGTAGCCTCCAACACAGCCAAACGCCTTGCCCAGTGTTCCGGAGATGATGTCCATCTTGTGCATGATGCCGTCTCGGTCCCCGATACCTCCTCCTCTAGCGCCGTACAGCCCCACCGCATGCACCTCGTCTACAAACGTGATGGCTCCAAACTCATGGGCCACGTCACACAACTCATCCAGAGGACACACCGCACCATCCATGGAGTGGACCGTCTCGAAGGCTACGATCTTTGGAGTGGACGGGTCTGACTTCTGTAGCAGCTCTCTCAAGTGGTCGGGGTCATTGTGACGGAATACGAATTTCTTGGCTCCGCTGTTCCTGATGCCCTGGATCATTGAGGCATGATTCCCTGCATCAGAATATATTTCacagcCTGGTATCATCTTGGCCAGGGTGAACAGGGTGGAGTCATTGGCTACGAAGCAGGAAGTGAAGAGTAGCGCAGCGTCCTTCCTGTGGAGATCTGCTAGTTCCTGTTCCAGTTCCACGTGGAACTTACtggtcccagaaatgttcctgGTTCCTCCAGCCCCACTGCCGTGCTTACGCAACGTCTCCGTGATGGAGTTGACGACCCGCGGGTGTCTGCTCATGCCCAGGTAGTCGTTGGAGCACCACACAGACACGTCTCTCCTGTCGCTAAGGGAATCGGTGTAGTCGTCACCCATGGGGAAGTCCGTGGCTCGCCGGTTAACCGTCTTAAAGACACGGTACGTGTGGTCACTCTTCTTCTCCTCAATCTTCCTCTCAAAGAACTCATCGTAGCGGAAGTTAGAGAAGCTGGGCATGTTCTCCTGCAGTAAATGGGACACCCTGGTTGGACGTTGATTCAGCAGCTTCTTCATCAGATCGGTTCGGGTAAGACCTCCAGACTTTGAGGAGGAACTACTGGCCAGAGCCTGGGCTGGGGTCACATCTTCTGAACGGTGCGGACCTCCTGCACGTCCTCCTGCAGCTGGAGGCTGGCCTGGCGCACCACACTGCTGTTCTGGCCCATCTCAGCCGCCAGGAAGGGGCACTTGGAGGCCACCGAGGCCTGGCCAGAGGGGTGCTTGGGATGGGGGTGGCTCTGAGGCagcttggtggtggtggtggtgcctcCATCCGCTACCTTCTCGGCTGATGTCTGAGCTGAAGTCACCGTGTCATCAGCTTTCTGGAAGCAAGCCGGTGAGGAACAGAGGGAGCGGGCCAGAGGCTTGGAAGCGAGGTCCATCATCACAGGACATTTCTGGGCATAGACCACCAGGGATTTCCGGGCCTGCTGGAAGAAGGCCTGGGGAACACGGGACAGGAACGGGCAGCGGCGAATTATAGTCTCCATCCTTCCAACGATTGTCCAAGCCTCGATATGCTTCGGATCACCTTCTCACAACTAAGCTTGAAAAAAAGCTAGATTGTCTTGGAAAGATCTCAGCGGCTGTTTTATTGTAAATATAACACTCTTAATAGTTCATatagctactgctccaaaactacGTTTCGTTATCCTGCACTGAGGACGAACGAAAGGACAAGGATAGACAACCGGGTTTATAAGAACGAATACTAACGCCAAATCTCGCGAGAGGATGAGTGTGTACGTCACAGCCCTCCAGAAAGTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750205 lncRNA upstream 3279 86944798 ~ 86945295 (+) False G659640
TU750177 lncRNA upstream 22274 86926093 ~ 86926300 (+) True G659623
TU750017 lncRNA upstream 182692 86763158 ~ 86765882 (+) True G659498
TU749966 lncRNA upstream 262183 86685091 ~ 86686391 (+) True G659451
TU749961 lncRNA upstream 265305 86676448 ~ 86683269 (+) False G659450
TU750182 lncRNA downstream 18505 86985579 ~ 87051602 (+) True LOC110488455
TU750187 lncRNA downstream 37918 87004992 ~ 87007275 (+) False LOC110488454
TU750189 lncRNA downstream 37918 87004992 ~ 87007275 (+) True LOC110488454
TU750242 lncRNA downstream 45419 87012493 ~ 87013162 (+) True G659668
TU750248 lncRNA downstream 49290 87016364 ~ 87017560 (+) True G659672
XM_036984279.1 mRNA upstream 542545 86344725 ~ 86406029 (+) False slc6a11b
XM_036984278.1 mRNA upstream 542545 86345451 ~ 86406029 (+) True slc6a11b
XM_036984280.1 mRNA upstream 591937 86345416 ~ 86356637 (+) False slc6a11b
XM_036984271.1 mRNA upstream 643040 86102266 ~ 86305534 (+) False atp2b2
XM_036984285.1 mRNA downstream 18477 86985551 ~ 87004405 (+) False LOC110488455
XR_002468410.2 mRNA downstream 37842 87004916 ~ 87007309 (+) False LOC110488454
NM_001160529.1 mRNA downstream 87440 87054514 ~ 87056155 (+) True si:dkey-42i9.4
XM_036984287.1 mRNA downstream 99088 87066162 ~ 87106788 (+) True ippk
XM_036984290.1 mRNA downstream 149686 87116760 ~ 87156905 (+) False ecm2
TU749484 other upstream 426752 86521060 ~ 86521822 (+) True G659136
TU749391 other upstream 535989 86408702 ~ 86412585 (+) False G659058
TU749087 other upstream 1052425 85895826 ~ 85896149 (+) True G658887
TU749085 other upstream 1061453 85886592 ~ 85887121 (+) True G658885
TU747351 other upstream 1941076 85006580 ~ 85007498 (+) True G657481
TU750287 other downstream 133390 87100464 ~ 87102270 (+) True G659706
TU750444 other downstream 417825 87384899 ~ 87387283 (+) True nisch
TU751823 other downstream 1455690 88422764 ~ 88427927 (+) True G660790
TU751969 other downstream 1655239 88622313 ~ 88689342 (+) True G660853
TU752005 other downstream 1724820 88691894 ~ 88694076 (+) False G660886

Expression Profile