RNA id: TU750647


Basic Information

Item Value
RNA id TU750647
length 1798
lncRNA type read_through
GC content 0.43
exon number 3
gene id G659969
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87196345 ~ 87198456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaacctttatttaacaaggcaagtcagttaagaacaaattcttattttcaatgacggccctaggaacagtgggttaactgcctgttcaggggacagaacgacagatttgtaccttgtcagctcggggggtttgaacttggAACCTTCcggtaactagtccaacactctaaccactaggctaccctgccgcctcaacactctaaccactaggctaccctgccgcctcaacactctaaccactaggctaccctaccgccccaCATTGACAATAACATAATGTTGACACTGCCCGGTTGACGTTCTGAGTCGCCAGTTGGACTCGTGGCGAGGAAACACTGTTTACGACGTCAGGTTCCCTCCATGAATATGCAGGGTTTGTCACGTATGAAAAAGCaaatatatttttcttaaaaggtgaaataaaagtaTAAAATACAGAAAAGGAAATATTCTAAGTCAAGTTTATTTAATTAGAACAGTTACATACATGTAATGCTATGATAGATAAGCATGTTCAAATGAAGACATGTAAAAAGTTTAACTAGTTTATTTAATTAGAACAGTTACATACATGTAATGCTGCGATAGATAAGCATGTTCAAATGAAGACATGTAAAAAGTTGACTAGTTTCTTTAAATATAAACGTTTAGCATGTAGACATGTAAAAGGTTGACTAGTTTCTTTAAATATAAACGCTTAGCATGTAGACCATGTAATGTAACAGTTGACTAGCATTTTCTGTCATTTTATGTTTATCACCATCTAGACATATAACGTTGACTAGTttctgtaaatatatatatacgttTATTAGCACCATGAAAACTAGTTTTATTTAGGCTATATCTAGCAGATTATAAAAGTGAGGCATGCAGTGTCAGAAAGAAATCCAAAGACAACATATCCAGCAGATTATACTAATTCCTAAACAGAGAAGAAACAAAGATATCGACTAAAACACGGAAGTACAAACAGGGGTGGATGCGTTTGTTGACTCGTTGAGGAGGAACGAAGAGTTGGtctttacaacaacaacaaaaaatcctgtGTGTTGAGGAGGTGGGTATTACTGAAATCTACCAGAAGGAGGCGCTATAGGATGGCTTGTGATCCTGACAGACACCCAATTCCCTAGGCAGGTAGGCACTTGTAGATCTGTAACTATATAGGATAGATATGACCATATGGTTAGAACTTCACCGTGCCATTGTGTGTGTTACTTCTTCGGGTTGTTGCCCAGCTGaatccccctgtgtgtgtgtgtgttacttccTCCGGTTGTTGCCCAGCTGaatccccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcctccggTTGTTGCCCAGCTGAatcaccctgtgtgtgtgcgtgtgtgtgtgtggtgtgtgtatgttacTTCCTCCGGTTGTTGCCCAGCTAaatccccctgtgtgtgtgtgtgtgtgtatatgttactTCCTCCGGTTGTTGCCCAGCTAaatccccctgtgtgtgtgtgtgtgtatatgttactTCCTCCGGTTGTTGCCCAGCTAaatccccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgttactTCCTCCGGTTGTTGCCCAGATGAACCCCTCTGTGTCCAGACACACAGCGGAAAGTGGCGGGCTGGACGTCCCAGTACTTAACAGGGTTAGAGAACAGACTGATGCCCGTATACAAGGTCTTCTTAACACTGGAGCGGACAGGGCAGAACTCATTCACCCCCACACTGCTGATGCTGTTAGCATGGAGGTACACCACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750631 lncRNA downstream 12213 87183771 ~ 87184132 (-) True G659959
TU750624 lncRNA downstream 18550 87177454 ~ 87177795 (-) True G659953
TU750615 lncRNA downstream 25578 87170129 ~ 87170767 (-) True G659944
TU750613 lncRNA downstream 27555 87168512 ~ 87168790 (-) True G659942
TU750607 lncRNA downstream 37101 87158397 ~ 87159244 (-) True G659936
TU750682 lncRNA upstream 22650 87221106 ~ 87249364 (-) False G659980
TU750683 lncRNA upstream 22650 87221106 ~ 87249103 (-) False G659980
TU750693 lncRNA upstream 34546 87233002 ~ 87233406 (-) False G659987
TU750694 lncRNA upstream 34546 87233002 ~ 87233406 (-) True G659987
TU750699 lncRNA upstream 43391 87241847 ~ 87242571 (-) True G659991
XR_005052725.1 mRNA downstream 136481 87058268 ~ 87059864 (-) True LOC118965396
XM_036984286.1 mRNA downstream 142471 87007438 ~ 87053874 (-) True atrip
XM_036984283.1 mRNA downstream 229353 86944797 ~ 86966992 (-) False LOC110528663
XM_036984284.1 mRNA downstream 229353 86944797 ~ 86966992 (-) True LOC110528663
XM_036984282.1 mRNA downstream 375832 86723768 ~ 86820513 (-) False poc1a
XM_021610803.2 mRNA upstream 142733 87341189 ~ 87342665 (-) True wu:fb55g09
XM_021610805.2 mRNA upstream 211724 87410180 ~ 87422713 (-) False si:dkeyp-87e7.4
XM_036984297.1 mRNA upstream 278933 87477389 ~ 87494213 (-) True LOC110528674
XM_036984300.1 mRNA upstream 296930 87495386 ~ 87554716 (-) False pxk
XM_036984298.1 mRNA upstream 296930 87495386 ~ 87554717 (-) False pxk
TU750481 other downstream 189053 87003736 ~ 87007292 (-) True G659824
TU750071 other downstream 562489 86632407 ~ 86633856 (-) True G659543
TU749640 other downstream 1035422 86160242 ~ 86160923 (-) True G659250
TU748304 other downstream 2188840 85006726 ~ 85007505 (-) False G658255
TU750588 other upstream 86445 87284901 ~ 87293755 (-) True LOC110528667
TU752038 other upstream 1054607 88253063 ~ 88259405 (-) True LOC110528687
TU752275 other upstream 1561037 88759493 ~ 88759938 (-) True G661128
TU752665 other upstream 1854620 89053076 ~ 89061481 (-) True G661426
TU752543 other upstream 1898591 89097047 ~ 89098578 (-) False G661335

Expression Profile