RNA id: TU750875


Basic Information

Item Value
RNA id TU750875
length 1503
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G660133
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87567812 ~ 87569529 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTTGGTGCTTTACGTGAACAAGCAAAAACATTAAGTAGATTGACAACTCATTAACATGTACAAGGATAACAAGTGTCACAAATTATTTTTTTGTCTCAGTGTAACTTAACGACATGGCATCAGCTAAAACTAAACAAAGCTAACTTGAAAATATGCAGGCGTTGGTTGTTGTGTCTCATTGCAGCGATACTCTATCGTCATGCATCGATACCATCAGGTTATATCACATATAACAGTGTATAGCAGCGCTTGAAGAAAAAGTACTTGGTTAATAATAATATTACAAAATGTACGTCGTTGTAGCTCCATTGTTTTTAATAACATTTATTTGATCATAAAACACAATGACAGATGTTCCTTCAATATGTTCCTAATGTACAAGGTGTAATATGTTGTCTGTGGATAATAGTAAGACCATGTACCAACCTTCAACAAGACAAATCAATCTAACAACAACTAGAAGTAGTTTGCTTTGAGTTTGTGTCTTCCTTTACATCTTGTGTTTTCAGGCGGGATCCGTCTCAGACACTACAGACCACGGTCCTTCAGCTGACTCAGAGGTAACGCAAActcaaatacaatacaaaaatCATGTAAGTTTAGTAACACATTGGAAATTAAACAAagaatataacatttgaaattaaGGTCCTTAAATcactaaataaatacaatgtcACAATATTGTATCCCAGTATTTTACACAGTCTTCCTTCGCCTTATAATCAAATTCAAGCATGAAACCGTAGCCGGCTGGTTAATGGGCTCATTCCCTGAGGACTAGATTAGAAAAATATTACTACATCATTTACAGATTATTAGATTTTTTACAGATAAACGCTCACTGTAggctggtttcctggacacagattaaacctAAAAACCTAGTACCTTACTGAAACCCTGACTGAAACCTGAAACCCTGACTGAAACCTGAAACCCTGACTGAAATCTGAAACCCTGACTGAAACCTAGTCTCTGACTGAAACCCAGACTGAAAACTGAAACCCTGACTGAAACCTAGTCCCGGACTGAAACCTAGTCCCGGACTGAAACCCGAAACACTGACTGAAACCTAGTCCCTGACTGAAACCTGAAACACTGACTGAAACCTAGTCCCTGACTGAAACCTGAAACACTGACTGAAACCTAGTCCCTGACTGAAACCTAGTCATTAACAAACCTCGTCCCTGACTGAAACGCATGTTCAATGGAGATCAAACCCCCATTGAAAGTGCTTCTTCGTCTAGGACTAGGTTTAACTTTGCCCGGGAAACGGGCACTATAAAGTCTAAGCTCCAGGTAGTCAGTCTCAGGAGAGTTTCTTGCTGTTGTTGGAGCCAGAGCCAGTGTTGTGTTGGTTATTGATAAAGTCCATGATGAGCTGAGCTGTCTTGCGAGGTCGCTCCATCACCACAGAGTGACCACAGTTGTCCAGCAGGTCCACCTGACAGCCAGAGACGGCCTCCTTCAGCATAGATGATCCAGAAACATCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU750870 lncRNA upstream 9462 87557609 ~ 87558350 (+) True G660128
TU750838 lncRNA upstream 57123 87510220 ~ 87510689 (+) True G660102
TU750824 lncRNA upstream 69261 87495139 ~ 87498551 (+) False G660096
TU750882 lncRNA downstream 4724 87574253 ~ 87632379 (+) True G660137
TU750919 lncRNA downstream 55908 87625437 ~ 87631250 (+) True G660169
TU750925 lncRNA downstream 59689 87629218 ~ 87637693 (+) True G660171
TU750930 lncRNA downstream 66295 87635824 ~ 87638222 (+) True G660175
TU750948 lncRNA downstream 103937 87673466 ~ 87673723 (+) True G660193
XM_036984294.1 mRNA upstream 182489 87346080 ~ 87385323 (+) False nisch
XM_036984295.1 mRNA upstream 182489 87346080 ~ 87385323 (+) False nisch
XM_036984296.1 mRNA upstream 195410 87346077 ~ 87372402 (+) False nisch
XM_036984289.1 mRNA upstream 252696 87293964 ~ 87315116 (+) False nol8
XM_036984304.1 mRNA downstream 77488 87647017 ~ 87658838 (+) True LOC110528678
XR_002474301.2 mRNA downstream 381900 87951429 ~ 87953496 (+) True LOC110528683
XM_036984327.1 mRNA downstream 397040 87966569 ~ 88011485 (+) True dennd6aa
NM_001245099.1 mRNA downstream 484582 88054111 ~ 88058818 (+) True il10
XR_005052690.1 mRNA downstream 551340 88120869 ~ 88127498 (+) True LOC110528686
TU750444 other upstream 180529 87384899 ~ 87387283 (+) True nisch
TU750287 other upstream 465542 87100464 ~ 87102270 (+) True G659706
TU749484 other upstream 1045990 86521060 ~ 86521822 (+) True G659136
TU749391 other upstream 1155227 86408702 ~ 86412585 (+) False G659058
TU749087 other upstream 1671663 85895826 ~ 85896149 (+) True G658887
TU751823 other downstream 853235 88422764 ~ 88427927 (+) True G660790
TU751969 other downstream 1052784 88622313 ~ 88689342 (+) True G660853
TU752005 other downstream 1122365 88691894 ~ 88694076 (+) False G660886
TU752324 other downstream 1247556 88817085 ~ 88817655 (+) True G661162
TU752344 other downstream 1403455 88972984 ~ 88975830 (+) True G661172

Expression Profile