RNA id: TU750882



Basic Information


Item Value
RNA id TU750882
length 489
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G660137
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 87574253 ~ 87632379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaagtccacagacccactccaaaaggctttcggagccatcatcgactcagtgggttttatccaacatgtctccggacccactcactgccacagtcatactctggacctagtttcgtccagtggaataaatgttgtggatcttaatgtttttcctcataattcaggactatcggaccaccattttattacattggcaacaaataatctgctcagaccccaaccaaggatcatcaaaagctgtgctataaattctcagacaacccaaagataactagatgcccttccagactccctccacctacccaatgacgtcagagtacaaaaataatttaaccacctaactgaggaactcaatttaacattgcgtaataccctagatgcagtcacacccctaaaaacaaaaaaaacttctcataagaaactagctccctggtacacagaaaatacccgagctctgaagcaagcttccagaaaattggaacggaaat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU750875 lncRNA upstream 4724 87567812 ~ 87569529 (+) True G660133
TU750870 lncRNA upstream 15903 87557609 ~ 87558350 (+) True G660128
TU750838 lncRNA upstream 63564 87510220 ~ 87510689 (+) True G660102
TU750825 lncRNA upstream 75702 87495139 ~ 87498551 (+) False G660096
TU750930 lncRNA downstream 3445 87635824 ~ 87638222 (+) True G660175
TU750948 lncRNA downstream 41087 87673466 ~ 87673723 (+) True G660193
TU750951 lncRNA downstream 52191 87684570 ~ 87686074 (+) False G660196
TU750952 lncRNA downstream 52191 87684570 ~ 87686074 (+) True G660196
TU750961 lncRNA downstream 54076 87686455 ~ 87687178 (+) True G660202
XM_036984294.1 mRNA upstream 188930 87346080 ~ 87385323 (+) False nisch
XM_036984295.1 mRNA upstream 188930 87346080 ~ 87385323 (+) False nisch
XM_036984296.1 mRNA upstream 201851 87346077 ~ 87372402 (+) False nisch
XM_036984289.1 mRNA upstream 259137 87293964 ~ 87315116 (+) False nol8
XM_036984304.1 mRNA downstream 14638 87647017 ~ 87658838 (+) True LOC110528678
XR_002474301.2 mRNA downstream 319050 87951429 ~ 87953496 (+) True LOC110528683
XM_036984327.1 mRNA downstream 334190 87966569 ~ 88011485 (+) True dennd6aa
NM_001245099.1 mRNA downstream 421732 88054111 ~ 88058818 (+) True il10
XR_005052690.1 mRNA downstream 488490 88120869 ~ 88127498 (+) True LOC110528686
TU750444 other upstream 186970 87384899 ~ 87387283 (+) True nisch
TU750287 other upstream 471983 87100464 ~ 87102270 (+) True G659706
TU749484 other upstream 1052431 86521060 ~ 86521822 (+) True G659136
TU749391 other upstream 1161668 86408702 ~ 86412585 (+) False G659058
TU749087 other upstream 1678104 85895826 ~ 85896149 (+) True G658887
TU751823 other downstream 790385 88422764 ~ 88427927 (+) True G660790
TU751969 other downstream 989934 88622313 ~ 88689342 (+) True G660853
TU752005 other downstream 1059515 88691894 ~ 88694076 (+) False G660886
TU752324 other downstream 1184706 88817085 ~ 88817655 (+) True G661162
TU752344 other downstream 1340605 88972984 ~ 88975830 (+) True G661172

Expression Profile