RNA id: TU751823


Basic Information

Item Value
RNA id TU751823
length 453
RNA type TUCP
GC content 0.53
exon number 2
gene id G660790
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88422764 ~ 88427927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtagtgtgtgtgtagtgtgtgtatagtgtgtgtgttgtgtgtgtatagtcgTCCCATCCTCACCTTGATTCCACTCCGTCCCTGCTGTTTCAGCAGTATATTCTCCGGCTTCAGGTCACAGTGGATGATCCGGTGTCGGTTCAAAGCCTCCAGACACTGCAGGATGCTGTGGGCAAACTTCCTGACCAGCGGCAGACTGAAGCCCTGGAACTTATTCCTCTTGATCAGCTCATACAGGTTCATGCTGAGCAGTTCAAAGGTCATGCAGATGTGGTTTCTGAAGGTGAAGTGTTCTAGCATGTGGACGGCGTTCATGGTTCCGGAGCGGTCCTGCTTACGGAGGTGTTCGAGGATACGGATTTCTTCCTGGGCTTGGCGGTGGAAACGCTTCTCGTTACGGACCATCTTCAGAGCCAGGTGCTGCTGCAGCTTGTGGTCGTACACCTTCGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU751807 lncRNA upstream 31907 88390555 ~ 88390857 (+) True G660775
TU751736 lncRNA upstream 130713 88291559 ~ 88292051 (+) True G660721
TU751730 lncRNA upstream 141406 88280800 ~ 88281358 (+) True G660717
TU751724 lncRNA upstream 156741 88265488 ~ 88266023 (+) True G660711
TU751711 lncRNA upstream 166856 88253084 ~ 88255908 (+) False G660705
TU751866 lncRNA downstream 27140 88455067 ~ 88480571 (+) False G660802
TU751867 lncRNA downstream 27140 88455067 ~ 88494198 (+) False G660802
TU751885 lncRNA downstream 27140 88455067 ~ 88501378 (+) False G660802
TU751887 lncRNA downstream 27140 88455067 ~ 88480571 (+) False G660802
TU751892 lncRNA downstream 27140 88455067 ~ 88480911 (+) False G660802
XM_036984332.1 mRNA upstream 181700 88238927 ~ 88241064 (+) True LOC110528688
XR_005052690.1 mRNA upstream 295266 88120869 ~ 88127498 (+) True LOC110528686
NM_001245099.1 mRNA upstream 363946 88054111 ~ 88058818 (+) True il10
XM_036984327.1 mRNA upstream 411279 87966569 ~ 88011485 (+) True dennd6aa
XR_002474301.2 mRNA upstream 469268 87951429 ~ 87953496 (+) True LOC110528683
NM_001160678.2 mRNA downstream 89508 88517435 ~ 88526446 (+) False pdrg1
XR_005052691.1 mRNA downstream 351437 88779364 ~ 88781772 (+) False LOC110528691
XM_036984349.1 mRNA downstream 362843 88790770 ~ 88852155 (+) True cass4
XM_036984351.1 mRNA downstream 425169 88853096 ~ 88974945 (+) False LOC110510506
XM_036984350.1 mRNA downstream 425170 88853097 ~ 88974945 (+) False LOC110510506
TU750444 other upstream 1035481 87384899 ~ 87387283 (+) True nisch
TU750287 other upstream 1320494 87100464 ~ 87102270 (+) True G659706
TU749484 other upstream 1900942 86521060 ~ 86521822 (+) True G659136
TU749391 other upstream 2010179 86408702 ~ 86412585 (+) False G659058
TU749087 other upstream 2526615 85895826 ~ 85896149 (+) True G658887
TU751969 other downstream 194386 88622313 ~ 88689342 (+) True G660853
TU752005 other downstream 263967 88691894 ~ 88694076 (+) False G660886
TU752324 other downstream 389158 88817085 ~ 88817655 (+) True G661162
TU752344 other downstream 545057 88972984 ~ 88975830 (+) True G661172
TU752338 other downstream 548011 88975938 ~ 88980209 (+) False LOC118965328

Expression Profile