RNA id: TU752543


Basic Information

Item Value
RNA id TU752543
length 1082
RNA type TUCP
GC content 0.40
exon number 2
gene id G661335
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88831729 ~ 89104274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacctcagcgtgggagcctcttgtacTAGTATCattgctcttgatagtatcactgctctggatagtatcactgctctggatagtatcattactctggatagtatcactactagtatcattgctcttgatagtatcactgctctggatagtatcactactctggatagtaacACTACtctgatagtatcactactctgatagtatcactactctgatagtatcactactctgataGTATCagtgctctggatagtatcactgctctggatagtatcactgctctggatagtatcagtgctctggatagtatcactactctggatagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactatggatagtatcactactctagatagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtataaCTACTCtagatagtatcactactctggatagtatcactactctggatagtatcactactctggatagtatcactactctggatagtatcactgctagtatcactgctctggatagtatcactactagtatcactactctggatagtatcactactagtatcactgctctggatagtatcactgctctggatagtatcactgcttttgatagtatcactactctgactagtatcactactctgactagtatcactactctgactagtatcactactctgactagtatcactactctagatagtatcactactctggatagtatcactgctctggatagtatcactgctctggatagtatcactgctctggattgtatcactgctctggattgtatcactgctctggattgtattactgctctggatagtatcactgctctggattgtatcactgctctggatagtatcactagtctggatagtatcactagtctggatagtatcactagtctggatagtatcactgctctggatagtatcactgctctggatagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU752662 lncRNA downstream 44695 89051503 ~ 89052352 (-) True G661424
TU752650 lncRNA downstream 67321 89028984 ~ 89029726 (-) True G661414
TU752631 lncRNA downstream 100306 88995303 ~ 88996741 (-) True G661400
TU752614 lncRNA downstream 119396 88975934 ~ 88977651 (-) False G661390
TU752615 lncRNA downstream 119396 88975934 ~ 88977651 (-) False G661390
TU752542 lncRNA upstream 1316 89099894 ~ 89102110 (-) False G661335
TU752544 lncRNA upstream 3782 89102360 ~ 89103676 (-) True G661335
TU752701 lncRNA upstream 22969 89121547 ~ 89125563 (-) False G661454
TU752703 lncRNA upstream 22969 89121547 ~ 89123520 (-) True G661454
TU752709 lncRNA upstream 36976 89135554 ~ 89137567 (-) True G661459
XM_036984347.1 mRNA downstream 317577 88777751 ~ 88779470 (-) True pdcd2l
XM_021610821.2 mRNA downstream 454498 88585172 ~ 88642549 (-) True LOC110528689
XM_036984346.1 mRNA downstream 642957 88421430 ~ 88454090 (-) True dyrk3
XM_036984344.1 mRNA downstream 642958 88421430 ~ 88454089 (-) False dyrk3
XM_036984345.1 mRNA downstream 658112 88421430 ~ 88438935 (-) False dyrk3
XM_021610827.2 mRNA upstream 290215 89388793 ~ 89392239 (-) True LOC110528694
XM_021610831.2 mRNA upstream 489519 89588097 ~ 89672181 (-) True LOC110528698
XM_036984360.1 mRNA upstream 601034 89699612 ~ 89827294 (-) True LOC110528697
XM_036984361.1 mRNA upstream 787994 89886572 ~ 89946188 (-) False hdac11
XM_036984363.1 mRNA upstream 787994 89886572 ~ 89946188 (-) True hdac11
TU752665 other downstream 35566 89053076 ~ 89061481 (-) True G661426
TU752275 other downstream 337109 88759493 ~ 88759938 (-) True G661128
TU752038 other downstream 837642 88253063 ~ 88259405 (-) True LOC110528687
TU750588 other downstream 1803292 87284901 ~ 87293755 (-) True LOC110528667
TU750481 other downstream 2089755 87003736 ~ 87007292 (-) True G659824
TU753077 other upstream 359573 89458151 ~ 89459700 (-) True G661773
TU753739 other upstream 578511 89677089 ~ 89681607 (-) True G662321
TU753944 other upstream 1063560 90162138 ~ 90162948 (-) False G662500
TU754104 other upstream 1353709 90452287 ~ 90453260 (-) False G662629
TU754355 other upstream 1644014 90742592 ~ 90764290 (-) True G662819

Expression Profile