RNA id: TU752742


Basic Information

Item Value
RNA id TU752742
length 1224
RNA type TUCP
GC content 0.55
exon number 1
gene id G661491
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89180814 ~ 89182037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccagcagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagatggtgaggaaaccaacagtggagacagtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacagtgaggaaaccagcagtggagatggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccagcagtggagacagtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagatggtgaggaaaccagcagtggagacagtgaggaaaccagcagtggagacagtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacagtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagatggtgaggaaaccaacagtggagacggtgaggaaaccagcagtggagacggtgaggaaaccaacagtggagacagtgaggaaaccaacagtggagacggtgaggaaaccaacagtggagacagTGAGGAAACCAGCAGTGGAGACAGTGAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU752499 lncRNA upstream 18009 89162360 ~ 89162805 (+) False G661304
TU752500 lncRNA upstream 18009 89162360 ~ 89162805 (+) True G661304
TU752485 lncRNA upstream 18925 89142031 ~ 89161889 (+) True G661291
TU752311 lncRNA upstream 82428 89092883 ~ 89098386 (+) True G661155
TU752752 lncRNA downstream 9024 89191061 ~ 89191267 (+) True G661500
TU752772 lncRNA downstream 17437 89199474 ~ 89200032 (+) True G661511
TU752782 lncRNA downstream 27509 89209546 ~ 89209805 (+) True G661520
TU752829 lncRNA downstream 122170 89304207 ~ 89311567 (+) True G661559
TU752832 lncRNA downstream 138732 89320769 ~ 89321532 (+) True G661562
XM_036984353.1 mRNA upstream 65289 88981718 ~ 89115525 (+) False LOC110529064
XM_036984354.1 mRNA upstream 65289 88981719 ~ 89115525 (+) True LOC110529064
XR_005052693.1 mRNA upstream 124846 89054147 ~ 89055968 (+) False LOC118965329
XR_005052694.1 mRNA upstream 124846 89054147 ~ 89055968 (+) False LOC118965329
XM_036984355.1 mRNA upstream 202220 88974702 ~ 88978594 (+) False LOC118965328
XM_036984358.1 mRNA downstream 216838 89398875 ~ 89473969 (+) False ptpdc1a
XM_036984357.1 mRNA downstream 216838 89398875 ~ 89474883 (+) False ptpdc1a
XM_036984359.1 mRNA downstream 243436 89425473 ~ 89474883 (+) True ptpdc1a
XM_021611208.2 mRNA downstream 297800 89479837 ~ 89492439 (+) True LOC110529066
XM_036984364.1 mRNA downstream 913985 90096022 ~ 90162648 (+) True iqsec1b
TU752740 other upstream 610 89179293 ~ 89180204 (+) True G661489
TU752338 other upstream 200605 88975938 ~ 88980209 (+) False LOC118965328
TU752344 other upstream 204984 88972984 ~ 88975830 (+) True G661172
TU752324 other upstream 363159 88817085 ~ 88817655 (+) True G661162
TU752005 other upstream 486738 88691894 ~ 88694076 (+) False G660886
TU752808 other downstream 73723 89255760 ~ 89256424 (+) True G661541
TU752985 other downstream 285947 89467984 ~ 89471391 (+) False G661692
TU752990 other downstream 287792 89469829 ~ 89470119 (+) True G661696
TU752986 other downstream 288516 89470553 ~ 89471391 (+) True G661692
TU753378 other downstream 817240 89999277 ~ 89999911 (+) True G662026

Expression Profile