RNA id: TU752956


Basic Information

Item Value
RNA id TU752956
length 311
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G661669
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89397241 ~ 89397551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcttagagacttacccagaaagactcacagctgtaatcactcttagagacttacccagaaagactcacagctgtaatcactcttagagacttacccagaaagactcacagctgtaatcactcttagagacttacccagaaagactcacagctgtaatcactcttagagacttacccagaaagactcacagctgtaatcactcttagagacttacccagaaagactcacagctgtaatcactcttagagacttacccagaaagactcacagctgtaatcgctgccaaagctgcttctacaaagtattgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU752949 lncRNA upstream 2442 89393019 ~ 89394799 (+) True G661662
TU752939 lncRNA upstream 11187 89385818 ~ 89386054 (+) True G661653
TU752922 lncRNA upstream 24169 89372786 ~ 89373072 (+) True G661636
TU752914 lncRNA upstream 28829 89367373 ~ 89368412 (+) True G661631
TU752832 lncRNA upstream 75709 89320769 ~ 89321532 (+) True G661562
TU752961 lncRNA downstream 3785 89401336 ~ 89401657 (+) True G661674
TU752964 lncRNA downstream 12673 89410224 ~ 89410717 (+) True G661677
TU752968 lncRNA downstream 16597 89414148 ~ 89414701 (+) True G661681
TU752981 lncRNA downstream 58692 89456243 ~ 89456758 (+) True G661690
TU752983 lncRNA downstream 70691 89468242 ~ 89471391 (+) False G661692
XM_036984353.1 mRNA upstream 281716 88981718 ~ 89115525 (+) False LOC110529064
XM_036984354.1 mRNA upstream 281716 88981719 ~ 89115525 (+) True LOC110529064
XR_005052693.1 mRNA upstream 341273 89054147 ~ 89055968 (+) False LOC118965329
XR_005052694.1 mRNA upstream 341273 89054147 ~ 89055968 (+) False LOC118965329
XM_036984355.1 mRNA upstream 418647 88974702 ~ 88978594 (+) False LOC118965328
XM_036984358.1 mRNA downstream 1324 89398875 ~ 89473969 (+) False ptpdc1a
XM_036984357.1 mRNA downstream 1324 89398875 ~ 89474883 (+) False ptpdc1a
XM_036984359.1 mRNA downstream 27922 89425473 ~ 89474883 (+) True ptpdc1a
XM_021611208.2 mRNA downstream 82286 89479837 ~ 89492439 (+) True LOC110529066
XM_036984364.1 mRNA downstream 698471 90096022 ~ 90162648 (+) True iqsec1b
TU752808 other upstream 140817 89255760 ~ 89256424 (+) True G661541
TU752742 other upstream 215204 89180814 ~ 89182037 (+) True G661491
TU752740 other upstream 217037 89179293 ~ 89180204 (+) True G661489
TU752338 other upstream 417032 88975938 ~ 88980209 (+) False LOC118965328
TU752344 other upstream 421411 88972984 ~ 88975830 (+) True G661172
TU752985 other downstream 70433 89467984 ~ 89471391 (+) False G661692
TU752990 other downstream 72278 89469829 ~ 89470119 (+) True G661696
TU752986 other downstream 73002 89470553 ~ 89471391 (+) True G661692
TU753378 other downstream 601726 89999277 ~ 89999911 (+) True G662026
TU753599 other downstream 1121334 90518885 ~ 90562967 (+) True LOC110528704

Expression Profile