RNA id: TU752964


Basic Information

Item Value
RNA id TU752964
length 232
lncRNA type intronic
GC content 0.45
exon number 2
gene id G661677
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89410224 ~ 89410717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttctgtttgttagtgttacctgtctctctgtcttagactcacctgtgtgtgtttctgttagtgttacctgtccctctgtctcagcctcacctgtgtgtgtttctgtttgttagtgttacctgtctctctgtctcagcctcacctgtgtgtgtttctgtttgttagtgttacctgtctctctgtcttagactcacctgtgtgtgtttctgtttgttagtgttacctgtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU752961 lncRNA upstream 8567 89401336 ~ 89401657 (+) True G661674
TU752956 lncRNA upstream 12673 89397241 ~ 89397551 (+) True G661669
TU752949 lncRNA upstream 15425 89393019 ~ 89394799 (+) True G661662
TU752939 lncRNA upstream 24170 89385818 ~ 89386054 (+) True G661653
TU752922 lncRNA upstream 37152 89372786 ~ 89373072 (+) True G661636
TU752968 lncRNA downstream 3431 89414148 ~ 89414701 (+) True G661681
TU752981 lncRNA downstream 45526 89456243 ~ 89456758 (+) True G661690
TU752983 lncRNA downstream 57525 89468242 ~ 89471391 (+) False G661692
TU753027 lncRNA downstream 127055 89537772 ~ 89538114 (+) True G661731
TU753035 lncRNA downstream 132341 89543058 ~ 89544309 (+) True G661737
XM_036984353.1 mRNA upstream 294699 88981718 ~ 89115525 (+) False LOC110529064
XM_036984354.1 mRNA upstream 294699 88981719 ~ 89115525 (+) True LOC110529064
XR_005052693.1 mRNA upstream 354256 89054147 ~ 89055968 (+) False LOC118965329
XR_005052694.1 mRNA upstream 354256 89054147 ~ 89055968 (+) False LOC118965329
XM_036984355.1 mRNA upstream 431630 88974702 ~ 88978594 (+) False LOC118965328
XM_036984359.1 mRNA downstream 14756 89425473 ~ 89474883 (+) True ptpdc1a
XM_021611208.2 mRNA downstream 69120 89479837 ~ 89492439 (+) True LOC110529066
XM_036984364.1 mRNA downstream 685305 90096022 ~ 90162648 (+) True iqsec1b
XM_036984368.1 mRNA downstream 879384 90290101 ~ 90409035 (+) False pparg
XM_036984365.1 mRNA downstream 879762 90290479 ~ 90409035 (+) False pparg
TU752808 other upstream 153800 89255760 ~ 89256424 (+) True G661541
TU752742 other upstream 228187 89180814 ~ 89182037 (+) True G661491
TU752740 other upstream 230020 89179293 ~ 89180204 (+) True G661489
TU752338 other upstream 430015 88975938 ~ 88980209 (+) False LOC118965328
TU752344 other upstream 434394 88972984 ~ 88975830 (+) True G661172
TU752985 other downstream 57267 89467984 ~ 89471391 (+) False G661692
TU752990 other downstream 59112 89469829 ~ 89470119 (+) True G661696
TU752986 other downstream 59836 89470553 ~ 89471391 (+) True G661692
TU753378 other downstream 588560 89999277 ~ 89999911 (+) True G662026
TU753599 other downstream 1108168 90518885 ~ 90562967 (+) True LOC110528704

Expression Profile